Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids
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Title
Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids
Authors
Keywords
Sequence alignment, Fruit crops, Introns, Chloroplast genome, Comparative genomics, Phylogenetics, Phylogenetic analysis, Sequence analysis
Journal
PLoS One
Volume 9, Issue 11, Pages e113049
Publisher
Public Library of Science (PLoS)
Online
2014-11-15
DOI
10.1371/journal.pone.0113049
References
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- History, Global Distribution, and Nutritional Importance of Citrus Fruits
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- AFLP data suggest a potential role for the low genetic diversity of acid lime (Citrus aurantifolia Swingle) in Oman in the outbreak of witches’ broom disease of lime
- (2012) A. M. Al-Sadi et al. EUPHYTICA
- Mutational Dynamics of Aroid Chloroplast Genomes
- (2012) Ibrar Ahmed et al. Genome Biology and Evolution
- Shotgun Proteomic Analysis of the Mexican Lime Tree Infected with “CandidatusPhytoplasma aurantifolia”
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- Intraspecific variation in mitochondrial genome sequence, structure, and gene content inSilene vulgaris, an angiosperm with pervasive cytoplasmic male sterility
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- Effect of phytoplasma infection on metabolite content and antioxidant enzyme activity in lime (Citrus aurantifolia)
- (2011) Somaieh Zafari et al. ACTA PHYSIOLOGIAE PLANTARUM
- Proteomic analysis of the Mexican lime tree response to “Candidatus Phytoplasma aurantifolia” infection
- (2011) Farzan Taheri et al. Molecular BioSystems
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
- (2011) J. Chris Blazier et al. PLANT MOLECULAR BIOLOGY
- Localized hypermutation and associated gene losses in legume chloroplast genomes
- (2010) A. M. Magee et al. GENOME RESEARCH
- Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus
- (2010) R. K. Jansen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage
- (2010) M. M. Guisinger et al. MOLECULAR BIOLOGY AND EVOLUTION
- Witches'-Broom Disease of Lime Affects Seed Germination and Seedling Growth But Is Not Seed Transmissible
- (2010) M. M. Faghihi et al. PLANT DISEASE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
- (2009) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Substitution of the Gene for Chloroplast RPS16 Was Assisted by Generation of a Dual Targeting Signal
- (2008) M. Ueda et al. MOLECULAR BIOLOGY AND EVOLUTION
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