Analyses of the Complete Genome and Gene Expression of Chloroplast of Sweet Potato [Ipomoea batata]

Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences

(2013) Lauren A. Eserman et al.   AMERICAN JOURNAL OF BOTANY

De novo assembly of the complete organelle genome sequences of azuki bean (Vigna angularis) using next-generation sequencers

(2013) Ken Naito et al.   BREEDING SCIENCE

The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms

(2013) Ji Ma et al.   GENE

The Complete Chloroplast Genome of Banana (Musa acuminata, Zingiberales): Insight into Plastid Monocotyledon Evolution

(2013) Guillaume Martin et al.   PLoS One

Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)

(2013) Ya-Yi Huang et al.   PLoS One

Plastid Genome Sequence of a Wild Woody Oil Species, Prinsepia utilis, Provides Insights into Evolutionary and Mutational Patterns of Rosaceae Chloroplast Genomes

(2013) Shuo Wang et al.   PLoS One

Balanced Gene Losses, Duplications and Intensive Rearrangements Led to an Unusual Regularly Sized Genome in Arbutus unedo Chloroplasts

(2013) Fernando Martínez-Alberola et al.   PLoS One

Evaluation and Validation of Reference Genes for Normalization of Quantitative Real-Time PCR Based Gene Expression Studies in Peanut

(2013) Dumbala Srinivas Reddy et al.   PLoS One

Characterization of the chloroplast genome sequence of oil palm (Elaeis guineensis Jacq.)

(2012) P. Uthaipaisanwong et al.   GENE

Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes

(2012) Tea Huotari et al.   GENE

Correlation Coefficients Between Different Methods of Expressing Bacterial Quantification Using Real Time PCR

(2012) Bahman Navidshad et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); Comparative evolutionary analyses with other three asterids

(2012) Dong-Keun Yi et al.   MOLECULES AND CELLS

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

(2012) Xiaojun Nie et al.   PLoS One

Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]

(2012) Xiang Tao et al.   PLoS One

Characterization of the complete chloroplast genome of Hevea brasiliensis reveals genome rearrangement, RNA editing sites and phylogenetic relationships

(2011) Sithichoke Tangphatsornruang et al.   GENE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Relative and Absolute Quantitative Real-Time PCR-Based Quantifications ofhcnCandphlDGene Transcripts in Natural Soil Spiked withPseudomonassp. Strain LBUM300

(2010) Nadine J. DeCoste et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

tRNADB-CE 2011: tRNA gene database curated manually by experts

(2010) T. Abe et al.   NUCLEIC ACIDS RESEARCH

Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant

(2010) Ching-Chih Tseng et al.   PLANT MOLECULAR BIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature

(2009) Henning Lenz et al.   CURRENT GENETICS

The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships

(2009) S. Tangphatsornruang et al.   DNA RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Complete chloroplast DNA sequence from a Korean endemic genus, Megaleranthis saniculifolia, and its evolutionary implications

(2009) Young-Kyu Kim et al.   MOLECULES AND CELLS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

(2008) D. Hernandez et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

GOBASE: an organelle genome database

(2008) E. A. O'Brien et al.   NUCLEIC ACIDS RESEARCH