High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut

Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut

(2017) Josh Clevenger et al.   Molecular Plant

QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)

(2017) Manish K. Pandey et al.   PLANT BIOTECHNOLOGY JOURNAL

Receptor Kinases in Plant-Pathogen Interactions: More Than Pattern Recognition

(2017) Dingzhong Tang et al.   PLANT CELL

Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.)

(2017) Manish K. Pandey et al.   Frontiers in Plant Science

Development and Evaluation of a High Density Genotyping ‘Axiom_Arachis’ Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut

(2017) Manish K. Pandey et al.   Scientific Reports

Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization

(2017) Spurthi N Nayak et al.   Scientific Reports

SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

(2016) Gilles Boutet et al.   BMC GENOMICS

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects

(2016) Manish K. Pandey et al.   Frontiers in Plant Science

Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022

(2016) Pawan Khera et al.   PLoS One

Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis

(2015) Soraya Leal-Bertioli et al.   GENETICS

Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers

(2015) Hui Wang et al.   Journal of Integrative Plant Biology

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

(2015) Sandip M Kale et al.   Scientific Reports

SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops

(2015) Josh P. Clevenger et al.   G3-Genes Genomes Genetics

Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis

(2015) Soraya Leal-Bertioli et al.   GENETICS

Genome-Wide Characterization and Expression Analysis of Major Intrinsic Proteins during Abiotic and Biotic Stresses in Sweet Orange (Citrus sinensis L. Osb.)

(2015) Cristina de Paula Santos Martins et al.   PLoS One

Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaeaL.)

(2014) Manish K Pandey et al.   BMC GENETICS

Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq)

(2014) Xiaojing Zhou et al.   BMC GENOMICS

Genetic Diversity and Demographic History of Cajanus spp. Illustrated from Genome-Wide SNPs

(2014) Rachit K. Saxena et al.   PLoS One

Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing

(2014) Xinpeng Qi et al.   Nature Communications

E3 ubiquitin-ligases and their target proteins during the regulation of plant innate immunity

(2014) Vincent Duplan et al.   Frontiers in Plant Science

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

(2013) Rajeev K. Varshney et al.   BIOTECHNOLOGY ADVANCES

Cysteine and Cysteine-Related Signaling Pathways in Arabidopsis thaliana

(2013) Luis C. Romero et al.   Molecular Plant

Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing

(2013) X. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F and F Generation-based Genetic Maps Derived from ‘Tifrunner’ × ‘GT-C20’ in Peanut

(2013) Hui Wang et al.   Plant Genome

A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers

(2012) Márcio C. Moretzsohn et al.   ANNALS OF BOTANY

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

(2012) Hui Wang et al.   BMC PLANT BIOLOGY

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

(2012) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Advances in Arachis genomics for peanut improvement

(2011) Manish K. Pandey et al.   BIOTECHNOLOGY ADVANCES

An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations

(2011) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS

Linkage map construction involving a reciprocal translocation

(2010) A. Farré et al.   THEORETICAL AND APPLIED GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Heat Shock Factors HsfB1 and HsfB2b Are Involved in the Regulation of Pdf1.2 Expression and Pathogen Resistance in Arabidopsis

(2009) Mukesh Kumar et al.   Molecular Plant

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY