The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut
Authors
Keywords
-
Journal
NATURE GENETICS
Volume 48, Issue 4, Pages 438-446
Publisher
Springer Nature
Online
2016-02-23
DOI
10.1038/ng.3517
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- First insight into divergence, representation and chromosome distribution of reverse transcriptase fragments from L1 retrotransposons in peanut and wild relative species
- (2015) Sergio Sebastián Samoluk et al. GENETICA
- Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis
- (2015) Soraya Leal-Bertioli et al. GENETICS
- Identification of QTLs for Rust Resistance in the Peanut Wild Species Arachis magna and the Development of KASP Markers for Marker-Assisted Selection
- (2015) Soraya C. M. Leal-Bertioli et al. G3-Genes Genomes Genetics
- Genetic Mapping of Resistance to Meloidogyne arenaria in Arachis stenosperma : A New Source of Nematode Resistance for Peanut
- (2015) Soraya C. M. Leal-Bertioli et al. G3-Genes Genomes Genetics
- Tetrasomic Recombination Is Surprisingly Frequent in Allotetraploid Arachis
- (2015) Soraya Leal-Bertioli et al. GENETICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq)
- (2014) Xiaojing Zhou et al. BMC GENOMICS
- Genome sizes in diploid and allopolyploid Arachis L. species (section Arachis)
- (2014) Sergio Sebastián Samoluk et al. GENETIC RESOURCES AND CROP EVOLUTION
- Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
- (2014) Rajiv C. McCoy et al. PLoS One
- The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome
- (2013) David J. Bertioli et al. ANNALS OF BOTANY
- Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes
- (2013) K. Shirasawa et al. DNA RESEARCH
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers
- (2012) Márcio C. Moretzsohn et al. ANNALS OF BOTANY
- COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
- (2012) B. Liu et al. BIOINFORMATICS
- A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut
- (2012) Ervin D Nagy et al. BMC GENOMICS
- In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut
- (2012) Kenta Shirasawa et al. BMC PLANT BIOLOGY
- Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential
- (2012) Gengyun Zhang et al. NATURE BIOTECHNOLOGY
- Genome-wide genetic changes during modern breeding of maize
- (2012) Yinping Jiao et al. NATURE GENETICS
- Genetic and geographic origin of domesticated peanut as evidenced by 5S rDNA and chloroplast DNA sequences
- (2012) Marina Grabiele et al. PLANT SYSTEMATICS AND EVOLUTION
- An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.)
- (2012) Bhimana Gautami et al. PLoS One
- ‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes
- (2012) Matthew D. Schultz et al. TRENDS IN GENETICS
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.)
- (2011) V. Sujay et al. MOLECULAR BREEDING
- Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A–B genome divergence
- (2011) Stephan Nielen et al. MOLECULAR GENETICS AND GENOMICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- An overview of peanut and its wild relatives
- (2011) David J. Bertioli et al. Plant Genetic Resources-Characterization and Utilization
- An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations
- (2011) Hongde Qin et al. THEORETICAL AND APPLIED GENETICS
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome
- (2010) Yanbin Hong et al. BMC PLANT BIOLOGY
- FIDEL—a retrovirus-like retrotransposon and its distinct evolutionary histories in the A- and B-genome components of cultivated peanut
- (2010) Stephan Nielen et al. CHROMOSOME RESEARCH
- Recombination is suppressed in an alien introgression in peanut harboring Rma, a dominant root-knot nematode resistance gene
- (2010) Ervin D. Nagy et al. MOLECULAR BREEDING
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- Species relationships among the wild B genome of Arachis species (section Arachis) based on FISH mapping of rDNA loci and heterochromatin detection: a new proposal for genome arrangement
- (2010) Germán Robledo et al. THEORETICAL AND APPLIED GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid
- (2009) Daniel Foncéka et al. BMC PLANT BIOLOGY
- A linkage map for the B-genome of Arachis (Fabaceae) and its synteny to the A-genome
- (2009) Márcio C Moretzsohn et al. BMC PLANT BIOLOGY
- Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
- (2009) Z. Tian et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea)
- (2008) Luu M Cuc et al. BMC PLANT BIOLOGY
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Monte Verde: Seaweed, Food, Medicine, and the Peopling of South America
- (2008) T. D. Dillehay et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started