Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq)

Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus

(2013) Xun Chen et al.   BMC GENOMICS

Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes

(2013) K. Shirasawa et al.   DNA RESEARCH

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads

(2012) Z. Chong et al.   BIOINFORMATICS

Construction and analysis of a high-density genetic linkage map in cabbage (Brassica oleracea L. var. capitata)

(2012) Wanxing Wang et al.   BMC GENOMICS

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

(2012) Ervin D Nagy et al.   BMC GENOMICS

In silico polymorphism analysis for the development of simple sequence repeat and transposon markers and construction of linkage map in cultivated peanut

(2012) Kenta Shirasawa et al.   BMC PLANT BIOLOGY

Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.)

(2012) Hui Wang et al.   BMC PLANT BIOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Discovery of Pod Shatter-Resistant Associated SNPs by Deep Sequencing of a Representative Library Followed by Bulk Segregant Analysis in Rapeseed

(2012) Zhiyong Hu et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.)

(2012) Bhimana Gautami et al.   PLoS One

Paired-end RAD-seq for de novo assembly and marker design without available reference

(2011) Eva-Maria Willing et al.   BIOINFORMATICS

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

(2011) Yada Chutimanitsakun et al.   BMC GENOMICS

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology

(2011) Rebekah E Oliver et al.   BMC GENOMICS

Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.)

(2011) V. Sujay et al.   MOLECULAR BREEDING

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

(2011) Ian Bancroft et al.   NATURE BIOTECHNOLOGY

An integrated genetic linkage map of cultivated peanut (Arachis hypogaea L.) constructed from two RIL populations

(2011) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

(2011) W. F. Pfender et al.   THEORETICAL AND APPLIED GENETICS

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence

(2010) David L Hyten et al.   BMC GENOMICS

A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome

(2010) Yanbin Hong et al.   BMC PLANT BIOLOGY

Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley

(2010) Haobing Li et al.   MOLECULAR GENETICS AND GENOMICS

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing

(2010) W. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid

(2009) Daniel Foncéka et al.   BMC PLANT BIOLOGY

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.)

(2008) R. K. Varshney et al.   THEORETICAL AND APPLIED GENETICS