QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)

QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.)

(2016) R. M. Kolekar et al.   EUPHYTICA

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

(2016) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

Molecular breeding for introgression of fatty acid desaturase mutant alleles ( ahFAD2A and ahFAD2B ) enhances oil quality in high and low oil containing peanut genotypes

(2016) Pasupuleti Janila et al.   PLANT SCIENCE

Exciting journey of 10 years from genomes to fields and markets: Some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut

(2016) Rajeev K Varshney   PLANT SCIENCE

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

(2016) Xiaoping Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects

(2016) Manish K. Pandey et al.   Frontiers in Plant Science

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.)

(2015) M. Sukruth et al.   EUPHYTICA

Next-generation sequencing for identification of candidate genes forFusariumwilt and sterility mosaic disease in pigeonpea (Cajanus cajan)

(2015) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq)

(2014) Xiaojing Zhou et al.   BMC GENOMICS

An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F2 maize population

(2014) Zongliang Chen et al.   BMC GENOMICS

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.)

(2014) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing

(2014) Xinpeng Qi et al.   Nature Communications

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

(2014) Rajeev K. Varshney et al.   PLOS BIOLOGY

The structure of a purple acid phosphatase involved in plant growth and pathogen defence exhibits a novel immunoglobulin-like fold

(2014) Svetlana Vladimirovna Antonyuk et al.   IUCrJ

Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics

(2013) Rajeev K. Varshney et al.   BIOTECHNOLOGY ADVANCES

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data

(2013) Shunichi Kosugi et al.   PLoS One

Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing

(2013) X. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

An improved allele-specific PCR primer design method for SNP marker analysis and its application

(2012) Jing Liu et al.   Plant Methods

Advances in Arachis genomics for peanut improvement

(2011) Manish K. Pandey et al.   BIOTECHNOLOGY ADVANCES

Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.)

(2011) V. Sujay et al.   MOLECULAR BREEDING

Molecular tagging of a rust resistance gene in cultivated groundnut (Arachis hypogaea L.) introgressed from Arachis cardenasii

(2011) Suvendu Mondal et al.   MOLECULAR BREEDING

Caenorhabditis elegans transthyretin-like protein TTR-52 mediates recognition of apoptotic cells by the CED-1 phagocyte receptor

(2010) Xiaochen Wang et al.   NATURE CELL BIOLOGY

Potential Role for Purple Acid Phosphatase in the Dephosphorylation of Wall Proteins in Tobacco Cells

(2010) R. Kaida et al.   PLANT PHYSIOLOGY

Identification of several small main-effect QTLs and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.)

(2010) K. Ravi et al.   THEORETICAL AND APPLIED GENETICS

A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.)

(2010) Y. P. Khedikar et al.   THEORETICAL AND APPLIED GENETICS

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

The first SSR-based genetic linkage map for cultivated groundnut (Arachis hypogaea L.)

(2008) R. K. Varshney et al.   THEORETICAL AND APPLIED GENETICS