Genotyping-by-sequencing for estimating relatedness in nonmodel organisms: Avoiding the trap of precise bias

From conservation genetics to conservation genomics: a genome-wide assessment of blue whales ( Balaenoptera musculus ) in Australian feeding aggregations

(2018) Catherine R. M. Attard et al.   Royal Society Open Science

Contrasting Patterns of Gene Flow for Amazonian Snakes That Actively Forage and Those That Wait in Ambush

(2017) Rafael de Fraga et al.   JOURNAL OF HEREDITY

Using relatedness networks to infer contemporary dispersal: Application to the endangered mammal Galemys pyrenaicus

(2017) Lídia Escoda et al.   MOLECULAR ECOLOGY

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

Relatedness and genetic variation in wild and captive populations of Mountain Bongo in Kenya obtained from genome-wide single-nucleotide polymorphism (SNP) data

(2017) Henrik Svengren et al.   Global Ecology and Conservation

Development and validation of a SNP panel for parentage assignment in rainbow trout

(2016) Sixin Liu et al.   AQUACULTURE

A novel holistic framework for genetic-based captive-breeding and reintroduction programs

(2016) C.R.M. Attard et al.   CONSERVATION BIOLOGY

Multi-generational evaluation of genetic diversity and parentage in captive southern pygmy perch (Nannoperca australis)

(2016) Catherine R. M. Attard et al.   CONSERVATION GENETICS

Applying SNP-Derived Molecular Coancestry Estimates to Captive Breeding Programs

(2016) Jamie A. Ivy et al.   JOURNAL OF HEREDITY

Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations

(2016) Anita J. Norman et al.   LANDSCAPE ECOLOGY

Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin

(2016) Chris J. Brauer et al.   MOLECULAR ECOLOGY

Within-group relatedness is correlated with colony-level social structure and reproductive sharing in a social fish

(2016) Jennifer K. Hellmann et al.   MOLECULAR ECOLOGY

Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates

(2016) Emily D. Fountain et al.   Molecular Ecology Resources

A comparative assessment of SNP and microsatellite markers for assigning parentage in a socially monogamous bird

(2016) Sara A. Kaiser et al.   Molecular Ecology Resources

Pedigrees or markers: Which are better in estimating relatedness and inbreeding coefficient?

(2016) Jinliang Wang   THEORETICAL POPULATION BIOLOGY

On the use of dense SNP marker data for the identification of distant relative pairs

(2016) M. Sun et al.   THEORETICAL POPULATION BIOLOGY

Towards population-level conservation in the critically endangered Antarctic blue whale: the number and distribution of their populations

(2016) Catherine R. M. Attard et al.   Scientific Reports

Low genetic diversity in pygmy blue whales is due to climate-induced diversification rather than anthropogenic impacts

(2015) C. R. M. Attard et al.   Biology Letters

Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population

(2015) Belinda Wright et al.   BMC GENOMICS

Genome-wide SNP loci reveal novel insights into koala (Phascolarctos cinereus) population variability across its range

(2015) Shannon R. Kjeldsen et al.   CONSERVATION GENETICS

The use and abuse of genetic marker-based estimates of relatedness and inbreeding

(2015) Helen R. Taylor   Ecology and Evolution

Assessment of microsatellite and SNP markers for parentage assignment in ex situ African Penguin (Spheniscus demersus) populations

(2015) Christiaan Labuschagne et al.   Ecology and Evolution

Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti

(2014) Gordana Rašić et al.   BMC GENOMICS

related: an R package for analysing pairwise relatedness from codominant molecular markers

(2014) Jack Pew et al.   Molecular Ecology Resources

A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

(2014) Lucia R. Weinman et al.   Molecular Ecology Resources

Relatedness in the post-genomic era: is it still useful?

(2014) Doug Speed et al.   NATURE REVIEWS GENETICS

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An empirical comparison of short tandem repeats (STRs) and single nucleotide polymorphisms (SNPs) for relatedness estimation in Chinese rhesus macaques (Macaca mulatta)

(2013) Cody T. Ross et al.   AMERICAN JOURNAL OF PRIMATOLOGY

More precisely biased: increasing the number of markers is not a silver bullet in genetic bottleneck testing

(2013) M. Zachariah Peery et al.   MOLECULAR ECOLOGY

Combined analyses of kinship andFSTsuggest potential drivers of chaotic genetic patchiness in high gene-flow populations

(2013) Matthew Iacchei et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Hybridization of Southern Hemisphere blue whale subspecies and a sympatric area off Antarctica: impacts of whaling or climate change?

(2012) Catherine R. M. Attard et al.   MOLECULAR ECOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal

(2012) J. I. HOFFMAN et al.   Molecular Ecology Resources

Identification of Novel Single Nucleotide Polymorphisms (SNPs) in Deer (Odocoileus spp.) Using the BovineSNP50 BeadChip

(2012) Gwilym D. Haynes et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Patterns of multiple paternity and maternity in fishes

(2011) SETH W. COLEMAN et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Variation in actual relationship as a consequence of Mendelian sampling and linkage

(2011) W.G. HILL et al.   Genetics Research

Using the genomic relationship matrix to predict the accuracy of genomic selection

(2011) M.E. Goddard et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Sociogenetic structure, kin associations and bonding in delphinids

(2011) LUCIANA M. MÖLLER   MOLECULAR ECOLOGY

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Genetic diversity and structure of blue whales (Balaenoptera musculus) in Australian feeding aggregations

(2010) Catherine R. M. Attard et al.   CONSERVATION GENETICS

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

Detecting populations in the ‘ambiguous’ zone: kinship-based estimation of population structure at low genetic divergence

(2010) PER J. PALSBØLL et al.   Molecular Ecology Resources

coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients

(2010) JINLIANG WANG   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

CHARACTERIZING SOURCE–SINK DYNAMICS WITH GENETIC PARENTAGE ASSIGNMENTS

(2008) M. Zachariah Peery et al.   ECOLOGY

Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium

(2008) Anders Albrechtsen et al.   GENETIC EPIDEMIOLOGY

Wild pedigrees: the way forward

(2008) J.M Pemberton   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES