A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

On the optimal trimming of high-throughput mRNA sequence data

(2014) Matthew D. MacManes   Frontiers in Genetics

A comparison of microsatellites and SNPs in parental assignment in the GIFT strain of Nile tilapia (Oreochromis niloticus): The power of exclusion

(2013) Trịnh Quốc Trọng et al.   AQUACULTURE

A validation of parentage-based tagging using hatchery steelhead in the Snake River basin

(2013) Craig A. Steele et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Comparison of the effectiveness of microsatellites and SNP panels for genetic identification, traceability and assessment of parentage in an inbred Angus herd

(2013) María E. Fernández et al.   GENETICS AND MOLECULAR BIOLOGY

Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

(2013) Jacquelin DeFaveri et al.   Molecular Ecology Resources

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Exploring of tri-allelic SNPs using Pyrosequencing and the SNaPshot methods for forensic application

(2012) Lagabaiyila Zha et al.   ELECTROPHORESIS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Empirical comparison of single nucleotide polymorphisms and microsatellites for population and demographic analyses of bowhead whales

(2012) PA Morin et al.   Endangered Species Research

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Infrequent Extra-Pair Paternity in the Banded Wren, a Synchronously Breeding Tropical Passerine

(2011) Emily R. A. Cramer et al.   CONDOR

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Spatiotemporal environmental variation, risk aversion, and the evolution of cooperative breeding as a bet-hedging strategy

(2011) D. R. Rubenstein   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Social structure influences extra-pair paternity in socially monogamous mammals

(2009) A. Cohas et al.   Biology Letters

Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

(2009) M Tokarska et al.   HEREDITY

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

SNPs that come in threes

(2009) Tanita Casci   NATURE REVIEWS GENETICS

Multiple paternity in reptiles: patterns and processes

(2008) TOBIAS ULLER et al.   MOLECULAR ECOLOGY