Evaluation of marine zooplankton community structure through environmental DNA metabarcoding

Comparison of morphological and next generation DNA sequencing methods for assessing zooplankton assemblages

(2017) Julio B.J. Harvey et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Estimating species richness using environmental DNA

(2016) Brett P. Olds et al.   Ecology and Evolution

Genetic signatures of ecological diversity along an urbanization gradient

(2016) Ryan P. Kelly et al.   PeerJ

eDNA and specific primers for early detection of invasive species – A case study on the bivalve Rangia cuneata, currently spreading in Europe

(2015) Alba Ardura et al.   MARINE ENVIRONMENTAL RESEARCH

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

Zooplankton fecal pellets, marine snow, phytodetritus and the ocean’s biological pump

(2015) Jefferson T. Turner   PROGRESS IN OCEANOGRAPHY

Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods

(2015) Jullien M. Flynn et al.   Ecology and Evolution

Development and Validation of Environmental DNA (eDNA) Markers for Detection of Freshwater Turtles

(2015) Christina M. Davy et al.   PLoS One

A Framework for a Marine Biodiversity Observing Network Within Changing Continental Shelf Seascapes

(2014) Frank Muller-Karger et al.   OCEANOGRAPHY

Improved Methods for Capture, Extraction, and Quantitative Assay of Environmental DNA from Asian Bigheaded Carp (Hypophthalmichthys spp.)

(2014) Cameron R. Turner et al.   PLoS One

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

(2013) Penelope K. Lindeque et al.   PLoS One

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

A size-structured food-web model for the global ocean

(2012) B. A. Ward et al.   LIMNOLOGY AND OCEANOGRAPHY

Efficient trawl avoidance by mesopelagic fishes causes large underestimation of their biomass

(2012) S Kaartvedt et al.   MARINE ECOLOGY PROGRESS SERIES

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA

(2012) DAVID M. LODGE et al.   MOLECULAR ECOLOGY

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Temporal and Spatial Variability of Mesozooplankton in a Shallow Sub-Tropical Bay: Influence of Top-Down Control

(2010) Christopher R. Kelble et al.   Estuaries and Coasts

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Global Biodiversity: Indicators of Recent Declines

(2010) S. H. M. Butchart et al.   SCIENCE

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs

(2008) Hege Vestheim et al.   Frontiers in Zoology

In hot water: zooplankton and climate change

(2008) A. J. Richardson   ICES JOURNAL OF MARINE SCIENCE