Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

Assessing the Consequences of Denoising Marker-Based Metagenomic Data

(2013) John M. Gaspar et al.   PLoS One

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

A size-structured food-web model for the global ocean

(2012) B. A. Ward et al.   LIMNOLOGY AND OCEANOGRAPHY

A molecular method for the identification of resting eggs of acartiid copepods in the Thau lagoon, France

(2012) P. K. Lindeque et al.   MARINE BIOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

(2012) James R. White et al.   PLoS One

Performance of Two Southern California Benthic Community Condition Indices Using Species Abundance and Presence-Only Data: Relevance to DNA Barcoding

(2012) J. Ananda Ranasinghe et al.   PLoS One

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Determining the Diet of Larvae of Western Rock Lobster (Panulirus cygnus) Using High-Throughput DNA Sequencing Techniques

(2012) Richard O'Rorke et al.   PLoS One

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

(2011) HOLLY M. BIK et al.   MOLECULAR ECOLOGY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

A Comparison of Parallel Pyrosequencing and Sanger Clone-Based Sequencing and Its Impact on the Characterization of the Genetic Diversity of HIV-1

(2011) Binhua Liang et al.   PLoS One

The influence of phytoplankton productivity, temperature and environmental stability on the control of copepod diversity in the North East Atlantic

(2011) Enrique Nogueira et al.   PROGRESS IN OCEANOGRAPHY

Spatial–temporal scales of synchrony in marine zooplankton biomass and abundance patterns: A world-wide comparison

(2011) Harold P. Batchelder et al.   PROGRESS IN OCEANOGRAPHY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Data integration for European marine biodiversity research: creating a database on benthos and plankton to study large-scale patterns and long-term changes

(2010) Leen Vandepitte et al.   HYDROBIOLOGIA

Seasonal dynamics of meroplankton assemblages at station L4

(2010) J. M. Highfield et al.   JOURNAL OF PLANKTON RESEARCH

Temporal variability and community composition of zooplankton at station L4 in the Western Channel: 20 years of sampling

(2010) D. Eloire et al.   JOURNAL OF PLANKTON RESEARCH

The L4 time-series: the first 20 years

(2010) R. Harris   JOURNAL OF PLANKTON RESEARCH

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Using DNA barcoding and phylogenetics to identify Antarctic invertebrate larvae: Lessons from a large scale study

(2010) Dorothea Heimeier et al.   Marine Genomics

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A ‘Multi-Omic’ Study of Seasonal and Diel Temporal Variation

(2010) Jack A. Gilbert et al.   PLoS One

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

(2010) P. J. Turnbaugh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Zooplankton diversity analysis through single-gene sequencing of a community sample

(2009) Ryuji J Machida et al.   BMC GENOMICS

A broad spatio-temporal view of the Western English Channel observatory

(2009) T. J. Smyth et al.   JOURNAL OF PLANKTON RESEARCH

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global latitudinal variations in marine copepod diversity and environmental factors

(2009) I. Rombouts et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage

(2008) K. Robert Clarke et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Biodiversity and biogeography of phages in modern stromatolites and thrombolites

(2008) Christelle Desnues et al.   NATURE

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH