Genetic signatures of ecological diversity along an urbanization gradient

A framework for inferring biological communities from environmental DNA

(2016) Andrew Olaf Shelton et al.   ECOLOGICAL APPLICATIONS

Multiscale impacts of armoring on Salish Sea shorelines: Evidence for cumulative and threshold effects

(2016) Megan N. Dethier et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies

(2016) James L. O’Donnell et al.   PLoS One

Comparative analysis of different survey methods for monitoring fish assemblages in coastal habitats

(2016) Duncan G.L. Baker et al.   PeerJ

Characterizing the distribution of an endangered salmonid using environmental DNA analysis

(2015) Matthew B. Laramie et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Shoreline Armoring in an Estuary Constrains Wrack-Associated Invertebrate Communities

(2015) Sarah M. Heerhartz et al.   Estuaries and Coasts

Cities are hotspots for threatened species

(2015) Christopher D. Ives et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The downside of eDNA as a survey tool in water bodies

(2015) Jean-Marc Roussel et al.   JOURNAL OF APPLIED ECOLOGY

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

Statistical approaches to account for false-positive errors in environmental DNA samples

(2015) José J. Lahoz-Monfort et al.   Molecular Ecology Resources

Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities

(2015) Dominique A. Cowart et al.   PLoS One

Future Coastal Population Growth and Exposure to Sea-Level Rise and Coastal Flooding - A Global Assessment

(2015) Barbara Neumann et al.   PLoS One

Patterns of seagrass community response to local shoreline development

(2014) Rachael E. Blake et al.   Estuaries and Coasts

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol-chloroform-isoamyl alcohol DNA extraction

(2014) Mark A. Renshaw et al.   Molecular Ecology Resources

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake

(2014) Jessica J. Eichmiller et al.   PLoS One

Participatory Conservation of Coastal Habitats: The Importance of Understanding Homeowner Decision Making to Mitigate Cascading Shoreline Degradation

(2014) Steven B. Scyphers et al.   Conservation Letters

Particle size distribution and optimal capture of aqueous macrobial eDNA

(2014) Cameron R. Turner et al.   Methods in Ecology and Evolution

Effects of Shoreline Armoring on Beach Wrack Subsidies to the Nearshore Ecotone in an Estuarine Fjord

(2013) Sarah M. Heerhartz et al.   Estuaries and Coasts

Estimation of Fish Biomass Using Environmental DNA

(2012) Teruhiko Takahara et al.   PLoS One

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Linking land- and sea-based activities to risk in coastal ecosystems

(2011) Jameal F. Samhouri et al.   BIOLOGICAL CONSERVATION

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Variation in recruitment does not drive the cline in diversity along an estuarine gradient

(2010) MN Dethier   MARINE ECOLOGY PROGRESS SERIES

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Nutrient enrichment homogenizes lake benthic assemblages at local and regional scales

(2009) Ian Donohue et al.   ECOLOGY

Global change and eutrophication of coastal waters

(2009) N. N. Rabalais et al.   ICES JOURNAL OF MARINE SCIENCE

The spread of Caulerpa racemosa var. cylindracea in the Mediterranean Sea: An example of how biological invasions can influence beta diversity

(2007) Luigi Piazzi et al.   MARINE ENVIRONMENTAL RESEARCH