Increased Expression of X-Linked Genes in Mammals Is Associated with a Higher Stability of Transcripts and an Increased Ribosome Density

Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast

(2014) Joseph V. Geisberg et al.   CELL

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

(2014) Schraga Schwartz et al.   CELL

TAIL-seq: Genome-wide Determination of Poly(A) Tail Length and 3′ End Modifications

(2014) Hyeshik Chang et al.   MOLECULAR CELL

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

(2014) Thomas M. Carlile et al.   NATURE

Transcriptional control of a whole chromosome: emerging models for dosage compensation

(2014) Francesco Ferrari et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Non-coding roX RNAs Prevent the Binding of the MSL-complex to Heterochromatic Regions

(2014) Margarida L. A. Figueiredo et al.   PLoS Genetics

The evolution of X chromosome inactivation in mammals: the demise of Ohno’s hypothesis?

(2013) Eugénie Pessia et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Mammalian X Upregulation Is Associated with Enhanced Transcription Initiation, RNA Half-Life, and MOF-Mediated H4K16 Acetylation

(2013) Xinxian Deng et al.   DEVELOPMENTAL CELL

Cross-Species Analysis of Genic GC3 Content and DNA Methylation Patterns

(2013) Tatiana Tatarinova et al.   Genome Biology and Evolution

Comment on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

(2013) T. Straub et al.   SCIENCE

Comment on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

(2013) F. Ferrari et al.   SCIENCE

Response to Comments on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

(2013) J. M. Vaquerizas et al.   SCIENCE

Sex chromosome dosage compensation: definitely not for everyone

(2013) Judith E. Mank   TRENDS IN GENETICS

Male X-linked genes in Drosophila melanogaster are compensated independently of the Male-Specific Lethal complex

(2013) Philge Philip et al.   Epigenetics & Chromatin

Genome-wide survey of interindividual differences of RNA stability in human lymphoblastoid cell lines

(2013) Jubao Duan et al.   Scientific Reports

Characterizing 5-methylcytosine in the mammalian epitranscriptome

(2013) Shobbir Hussain et al.   GENOME BIOLOGY

Sequence signatures involved in targeting the male-specific lethal complex to X-chromosomal genes in Drosophila melanogaster

(2012) Philge Philip et al.   BMC GENOMICS

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals

(2012) H. Tani et al.   GENOME RESEARCH

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

(2012) Dan Dominissini et al.   NATURE

Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription

(2012) Thomas Conrad et al.   NATURE REVIEWS GENETICS

Claims and counterclaims of X-chromosome compensation

(2012) James A Birchler   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Buffering and proteolysis are induced by segmental monosomy in Drosophila melanogaster

(2012) Lina E. Lundberg et al.   NUCLEIC ACIDS RESEARCH

Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA

(2012) Jeffrey E. Squires et al.   NUCLEIC ACIDS RESEARCH

Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation

(2012) F. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome

(2012) E. Pessia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability

(2012) Hidenori Tani et al.   RNA Biology

Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters

(2012) T. Conrad et al.   SCIENCE

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

Mutations in the Transcription Elongation Factor SPT5 Disrupt a Reporter for Dosage Compensation in Drosophila

(2012) Mahalakshmi Prabhakaran et al.   PLoS Genetics

Buffering and the evolution of chromosome-wide gene regulation

(2011) Per Stenberg et al.   CHROMOSOMA

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila

(2011) Erica Larschan et al.   NATURE

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis

(2011) Hong Lin et al.   NATURE GENETICS

Evidence for dosage compensation between the X chromosome and autosomes in mammals

(2011) Peter V Kharchenko et al.   NATURE GENETICS

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

(2011) Xinxian Deng et al.   NATURE GENETICS

X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription

(2011) Eda Yildirim et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

(2011) David M Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Choice of the Filtering Method in Microarrays Affects the Inference Regarding Dosage Compensation of the Active X-Chromosome

(2011) Raphaële Castagné et al.   PLoS One

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome

(2010) Masayuki Sakurai et al.   Nature Chemical Biology

RNA sequencing shows no dosage compensation of the active X-chromosome

(2010) Yuanyan Xiong et al.   NATURE GENETICS

Expression in Aneuploid Drosophila S2 Cells

(2010) Yu Zhang et al.   PLOS BIOLOGY

Control of poly(A) tail length

(2010) Christian R. Eckmann et al.   Wiley Interdisciplinary Reviews-RNA

Dosage compensation and the global re-balancing of aneuploid genomes

(2010) Matthias Prestel et al.   GENOME BIOLOGY

Evidence that the nonsense-mediated mRNA decay pathway participates in X chromosome dosage compensation in mammals

(2009) Shanye Yin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Progress and prospects toward our understanding of the evolution of dosage compensation

(2009) Beatriz Vicoso et al.   CHROMOSOME RESEARCH

Drosophila dosage compensation: a complex voyage to the X chromosome

(2009) M. E. Gelbart et al.   DEVELOPMENT

Coordinated Regulation of Heterochromatic Genes in Drosophila melanogaster Males

(2009) X. Deng et al.   GENETICS

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

(2009) Caroline C. Friedel et al.   NUCLEIC ACIDS RESEARCH

Buffering of Segmental and Chromosomal Aneuploidies in Drosophila melanogaster

(2009) Per Stenberg et al.   PLoS Genetics

Dosage compensation on the active X chromosome minimizes transcriptional noise of X-linked genes in mammals

(2009) Shanye Yin et al.   GENOME BIOLOGY

How many human genes can be defined as housekeeping with current expression data?

(2008) Jiang Zhu et al.   BMC GENOMICS

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

The multiple lives of NMD factors: balancing roles in gene and genome regulation

(2008) Olaf Isken et al.   NATURE REVIEWS GENETICS