Transcriptional control of a whole chromosome: emerging models for dosage compensation

Mechanistic Interpretation of Promoter-Proximal Peaks and RNAPII Density Maps

(2013) Andreas H. Ehrensberger et al.   CELL

Role and control of X chromosome dosage in mammalian development

(2013) Edda G Schulz et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Mammalian X Upregulation Is Associated with Enhanced Transcription Initiation, RNA Half-Life, and MOF-Mediated H4K16 Acetylation

(2013) Xinxian Deng et al.   DEVELOPMENTAL CELL

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation

(2013) Matthew D. Simon et al.   NATURE

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

(2013) Job Dekker et al.   NATURE REVIEWS GENETICS

Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway

(2013) Ryu-Suke Nozawa et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Comment on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

(2013) T. Straub et al.   SCIENCE

Comment on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

(2013) F. Ferrari et al.   SCIENCE

Response to Comments on "Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters"

(2013) J. M. Vaquerizas et al.   SCIENCE

The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome

(2013) J. M. Engreitz et al.   SCIENCE

“Jump Start and Gain” Model for Dosage Compensation in Drosophila Based on Direct Sequencing of Nascent Transcripts

(2013) Francesco Ferrari et al.   Cell Reports

Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation

(2013) William S Kruesi et al.   eLife

Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation

(2012) J. Mauro Calabrese et al.   CELL

Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations

(2012) S. F. Pinter et al.   GENOME RESEARCH

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Caenorhabditis elegans Dosage Compensation Regulates Histone H4 Chromatin State on X Chromosomes

(2012) M. B. Wells et al.   MOLECULAR AND CELLULAR BIOLOGY

POF Regulates the Expression of Genes on the Fourth Chromosome in Drosophila melanogaster by Binding to Nascent RNA

(2012) A.-M. Johansson et al.   MOLECULAR AND CELLULAR BIOLOGY

The long-range interaction landscape of gene promoters

(2012) Amartya Sanyal et al.   NATURE

Spatial partitioning of the regulatory landscape of the X-inactivation centre

(2012) Elphège P. Nora et al.   NATURE

Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chip

(2012) Tom Sexton et al.   Nature Protocols

Claims and counterclaims of X-chromosome compensation

(2012) James A Birchler   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Distinct contributions of MSL complex subunits to the transcriptional enhancement responsible for dosage compensation in Drosophila

(2012) David Dunlap et al.   NUCLEIC ACIDS RESEARCH

Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation

(2012) F. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters

(2012) T. Conrad et al.   SCIENCE

Gene Loops Enhance Transcriptional Directionality

(2012) S. M. Tan-Wong et al.   SCIENCE

Defining the Status of RNA Polymerase at Promoters

(2012) Leighton J. Core et al.   Cell Reports

H4K20me1 Contributes to Downregulation of X-Linked Genes for C. elegans Dosage Compensation

(2012) Anne Vielle et al.   PLoS Genetics

Mutations in the Transcription Elongation Factor SPT5 Disrupt a Reporter for Dosage Compensation in Drosophila

(2012) Mahalakshmi Prabhakaran et al.   PLoS Genetics

YY1 Tethers Xist RNA to the Inactive X Nucleation Center

(2011) Yesu Jeon et al.   CELL

An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression

(2011) R. R. Pferdehirt et al.   GENES & DEVELOPMENT

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA

(2011) E. Splinter et al.   GENES & DEVELOPMENT

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila

(2011) Y. L. Khodor et al.   GENES & DEVELOPMENT

Influence of Histone Tails and H4 Tail Acetylations on Nucleosome–Nucleosome Interactions

(2011) Ying Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

(2011) Ci Chu et al.   MOLECULAR CELL

X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila

(2011) Erica Larschan et al.   NATURE

Nascent transcript sequencing visualizes transcription at nucleotide resolution

(2011) L. Stirling Churchman et al.   NATURE

Relative overexpression of X-linked genes in mouse embryonic stem cells is consistent with Ohno's hypothesis

(2011) Hong Lin et al.   NATURE GENETICS

Evidence for dosage compensation between the X chromosome and autosomes in mammals

(2011) Peter V Kharchenko et al.   NATURE GENETICS

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

(2011) Xinxian Deng et al.   NATURE GENETICS

X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription

(2011) Eda Yildirim et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The genomic binding sites of a noncoding RNA

(2011) M. D. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Analysis of the Relationship between JIL-1 Kinase and Transcription

(2011) Catherine Regnard et al.   PLoS Genetics

MSL cis-spreading from roX gene up-regulates the neighboring genes

(2010) Seung-Won Park et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure?

(2010) Yu Zhang et al.   BMC GENOMICS

Targeting X chromosomes for repression

(2010) Barbara J Meyer   CURRENT OPINION IN GENETICS & DEVELOPMENT

Broad chromosomal domains of histone modification patterns in C. elegans

(2010) T. Liu et al.   GENOME RESEARCH

RNA sequencing shows no dosage compensation of the active X-chromosome

(2010) Yuanyan Xiong et al.   NATURE GENETICS

The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association

(2010) Abdollah Allahverdi et al.   NUCLEIC ACIDS RESEARCH

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

(2010) M. B. Gerstein et al.   SCIENCE

2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association

(2010) Sylvain Maenner et al.   PLOS BIOLOGY

Expression in Aneuploid Drosophila S2 Cells

(2010) Yu Zhang et al.   PLOS BIOLOGY

Condensins Regulate Meiotic DNA Break Distribution, thus Crossover Frequency, by Controlling Chromosome Structure

(2009) David G. Mets et al.   CELL

Three Distinct Condensin Complexes Control C. elegans Chromosome Dynamics

(2009) Gyorgyi Csankovszki et al.   CURRENT BIOLOGY

The C. elegans Dosage Compensation Complex Propagates Dynamically and Independently of X Chromosome Sequence

(2009) Sevinç Ercan et al.   CURRENT BIOLOGY

The dosage compensation complex shapes the conformation of the X chromosome in Drosophila

(2009) C. Grimaud et al.   GENES & DEVELOPMENT

A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome

(2009) J. Jans et al.   GENES & DEVELOPMENT

High-resolution analysis of epigenetic changes associated with X inactivation

(2009) H. Marks et al.   GENOME RESEARCH

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation

(2009) Marnie E Gelbart et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila

(2009) S. Nechaev et al.   SCIENCE

Restricting Dosage Compensation Complex Binding to the X Chromosomes by H2A.Z/HTZ-1

(2009) Emily L. Petty et al.   PLoS Genetics

Genome-wide Analysis Reveals MOF as a Key Regulator of Dosage Compensation and Gene Expression in Drosophila

(2008) Jop Kind et al.   CELL

A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome

(2008) Artyom A. Alekseyenko et al.   CELL

Dynamic interactions between the promoter and terminator regions of the mammalianBRCA1gene

(2008) Sue Mei Tan-Wong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome

(2008) J. Zhao et al.   SCIENCE

Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

(2008) Leighton J. Core et al.   SCIENCE

The Chromosomal High-Affinity Binding Sites for the Drosophila Dosage Compensation Complex

(2008) Tobias Straub et al.   PLoS Genetics

The Genomic Distribution and Function of Histone Variant HTZ-1 during C. elegans Embryogenesis

(2008) Christina M. Whittle et al.   PLoS Genetics