Cross-Species Analysis of Genic GC3 Content and DNA Methylation Patterns

On the presence and role of human gene-body DNA methylation

(2015) Daudi Jjingo et al.   Oncotarget

Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags

(2013) T. Ahmad et al.   DNA RESEARCH

Tumor Suppressors Status in Cancer Cell Line Encyclopedia

(2013) Dmitriy Sonkin et al.   Molecular Oncology

Genome-wide association between DNA methylation and alternative splicing in an invertebrate

(2012) Kevin Flores et al.   BMC GENOMICS

Relationship between Gene Compactness and Base Composition in Rice and Human Genome

(2012) Pamela Mukhopadhyay et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Mutational Bias and Gene Conversion Affect the Intraspecific Nitrogen Stoichiometry of the Arabidopsis thaliana Transcriptome

(2012) Torsten Günther et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome Sequencing Identifies SPL7-Regulated Copper Acquisition Genes FRO4/FRO5 and the Copper Dependence of Iron Homeostasis in Arabidopsis

(2012) M. Bernal et al.   PLANT CELL

Recombination is associated with the evolution of genome structure and worker behavior in honey bees

(2012) C. F. Kent et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

(2012) S. Foret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome and methylome interactions in rice hybrids

(2012) Ramakrishna K. Chodavarapu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?

(2012) Steven B. Roberts et al.   Frontiers in Physiology

Human Epigenome Data Reveal Increased CpG Methylation in Alternatively Spliced Sites and Putative Exonic Splicing Enhancers

(2011) Christina Anastasiadou et al.   DNA AND CELL BIOLOGY

Ongoing GC-Biased Evolution Is Widespread in the Human Genome and Enriched Near Recombination Hot Spots

(2011) Sol Katzman et al.   Genome Biology and Evolution

Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates

(2011) L. Nanty et al.   GENOME RESEARCH

GC-Biased Gene Conversion and Selection Affect GC Content in the Oryza Genus (rice)

(2011) Aline Muyle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly

(2011) S. Takuno et al.   MOLECULAR BIOLOGY AND EVOLUTION

Synonymous Codon Usage, GC3, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots

(2011) Gaurav Sablok et al.   MOLECULAR BIOTECHNOLOGY

DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer

(2011) P Lopez-Serra et al.   ONCOGENE

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

(2011) Michael J. Ziller et al.   PLoS Genetics

GC3 biology in corn, rice, sorghum and other grasses

(2010) Tatiana V Tatarinova et al.   BMC GENOMICS

DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)

(2010) Mackenzie R Gavery et al.   BMC GENOMICS

Relationship between nucleosome positioning and DNA methylation

(2010) Ramakrishna K. Chodavarapu et al.   NATURE

Single base–resolution methylome of the silkworm reveals a sparse epigenomic map

(2010) Hui Xiang et al.   NATURE BIOTECHNOLOGY

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

(2010) Frank Lyko et al.   PLOS BIOLOGY

Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes

(2009) Laurent Duret et al.   Annual Review of Genomics and Human Genetics

Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes

(2009) Sylvain Foret et al.   BMC GENOMICS

Age-and caste-dependent decrease in expression of genes maintaining DNA and RNA quality and mitochondrial integrity in the honeybee wing muscle

(2009) Randi M. Aamodt   EXPERIMENTAL GERONTOLOGY

Can GC Content at Third-Codon Positions Be Used as a Proxy for Isochore Composition?

(2009) E. Elhaik et al.   MOLECULAR BIOLOGY AND EVOLUTION

DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera

(2009) N. Elango et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana

(2008) Felipe F Aceituno et al.   BMC GENOMICS

Cause and Consequences of Genetic and Epigenetic Alterations in Human Cancer

(2008) B. Sadikovic et al.   CURRENT GENOMICS

High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression

(2008) X. Li et al.   PLANT CELL

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

(2008) Laurent Duret et al.   PLoS Genetics