Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats

Rectinema cohabitans gen. nov., sp. nov., a rod-shaped spirochaete isolated from an anaerobic naphthalene-degrading enrichment culture

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A novel tubular microbial electrolysis cell for high rate hydrogen production

(2017) Kun Guo et al.   JOURNAL OF POWER SOURCES

Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions

(2017) Joseph A. Christie-Oleza et al.   Nature Microbiology

A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes

(2016) Anestis Gkanogiannis et al.   BMC BIOINFORMATICS

Anaerobic Degradation of Benzene and Polycyclic Aromatic Hydrocarbons

(2016) Rainer U. Meckenstock et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

HydDB: A web tool for hydrogenase classification and analysis

(2016) Dan Søndergaard et al.   Scientific Reports

Biodegradation: Updating the Concepts of Control for Microbial Cleanup in Contaminated Aquifers

(2015) Rainer U. Meckenstock et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Spatial distributions of sulphur species and sulphate-reducing bacteria provide insights into sulphur redox cycling and biodegradation hot-spots in a hydrocarbon-contaminated aquifer

(2015) Florian Einsiedl et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples

(2015) Boonfei Tan et al.   ISME Journal

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

(2015) Masaru K Nobu et al.   ISME Journal

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

“You produce while I clean up”, a strategy revealed by exoproteomics duringSynechococcus-Roseobacterinteractions

(2015) Joseph A. Christie-Oleza et al.   PROTEOMICS

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

(2014) Kelly C Wrighton et al.   ISME Journal

Managing the interactions between sulfate- and perchlorate-reducing bacteria when using hydrogen-fed biofilms to treat a groundwater with a high perchlorate concentration

(2014) Aura Ontiveros-Valencia et al.   WATER RESEARCH

Volatile hydrocarbons inhibit methanogenic crude oil degradation

(2014) Angela Sherry et al.   Frontiers in Microbiology

Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers

(2012) Sabine Kleinsteuber et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

(2012) Martin Taubert et al.   ISME Journal

A Bacterial Electron-bifurcating Hydrogenase

(2012) Kai Schuchmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The Chimeric Genome of Sphaerochaeta: Nonspiral Spirochetes That Break with the Prevalent Dogma in Spirochete Biology

(2012) A. Caro-Quintero et al.   mBio

The Pathway Tools Pathway Prediction Algorithm

(2012) Peter D. Karp et al.   Standards in Genomic Sciences

Sphaerochaeta globosa gen. nov., sp. nov. and Sphaerochaeta pleomorpha sp. nov., free-living, spherical spirochaetes

(2011) K. M. Ritalahti et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47

(2010) Franz Bergmann et al.   ENVIRONMENTAL MICROBIOLOGY

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

(2010) Christian Winderl et al.   ISME Journal

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Community dynamics within a bacterial consortium during growth on toluene under sulfate-reducing conditions

(2009) Susann Müller et al.   FEMS MICROBIOLOGY ECOLOGY

Combined Genomic and Proteomic Approaches Identify Gene Clusters Involved in Anaerobic 2-Methylnaphthalene Degradation in the Sulfate-Reducing Enrichment Culture N47

(2009) D. Selesi et al.   JOURNAL OF BACTERIOLOGY

Terminal Restriction Fragment Length Polymorphism for Identification of Cryptosporidium Species in Human Feces

(2008) L. S. Waldron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial biodiversity in groundwater ecosystems

(2008) C. GRIEBLER et al.   FRESHWATER BIOLOGY

The microbial loop – 25 years later

(2008) Tom Fenchel   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Effect of solvents on obligately anaerobic bacteria

(2007) Maria Fernanda Rodriguez Martinez et al.   ANAEROBE