Transcriptomics Analysis of the Chinese Pear Pathotype of Alternaria alternata Gives Insights into Novel Mechanisms of HSAF Antifungal Activities

LesR is a novel upstream regulator that controls downstream Clp expression to modulate antibiotic HSAF biosynthesis and cell aggregation in Lysobacter enzymogenes OH11

(2017) Huiyong Xu et al.   Microbial Cell Factories

Adiponectin controls the apoptosis and the expression of tight junction proteins in brain endothelial cells through AdipoR1 under beta amyloid toxicity

(2017) Juhyun Song et al.   Cell Death & Disease

Serine-Dependent Sphingolipid Synthesis Is a Metabolic Liability of Aneuploid Cells

(2017) Sunyoung Hwang et al.   Cell Reports

Integration of the tricarboxylic acid (TCA) cycle with cAMP signaling and Sfl2 pathways in the regulation of CO2 sensing and hyphal development in Candida albicans

(2017) Li Tao et al.   PLoS Genetics

Transcriptional and Antagonistic Responses of Biocontrol Strain Lysobacter enzymogenes OH11 to the Plant Pathogenic Oomycete Pythium aphanidermatum

(2017) Yangyang Zhao et al.   Frontiers in Microbiology

Correlation between resistance mechanisms in Staphylococcus aureus and cell wall and septum thickening

(2017) Ana Belén García et al.   Infection and Drug Resistance

Globular Adiponectin Inhibits the Apoptosis of Mesenchymal Stem Cells Induced by Hypoxia and Serum Deprivation via the AdipoR1-Mediated Pathway

(2016) Xia-Qiu Tian et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Alternaria alternata apple pathotype (A. mali) causes black spot of European pear

(2016) Megumu Tanahashi et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

The transcription factor VpCRZ1 is required for fruiting body formation and pathogenicity in Valsa pyri

(2016) Feng He et al.   MICROBIAL PATHOGENESIS

HSAF-induced antifungal effects in Candida albicans through ROS-mediated apoptosis

(2016) Yanjiao Ding et al.   RSC Advances

A TonB-dependent receptor regulates antifungal HSAF biosynthesis in Lysobacter

(2016) Ruping Wang et al.   Scientific Reports

Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

(2016) Carolyn A. Zeiner et al.   PLoS One

Transcriptomic profile of tobacco in response to Alternaria longipes and Alternaria alternata infections

(2016) Shengchang Duan et al.   Scientific Reports

Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress

(2016) Mingshuang Wang et al.   Scientific Reports

High glucose/High Lipids impair vascular adiponectin function via inhibition of caveolin-1/AdipoR1 signalsome formation

(2015) Gai-Zhen Liu et al.   FREE RADICAL BIOLOGY AND MEDICINE

Discrete lineages within Alternaria alternata species group: Identification using new highly variable loci and support from morphological characters

(2015) Andrew D. Armitage et al.   Fungal Biology

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Synthesis of a 2,4,6,8,10-dodecapentanoic acid thioester as a substrate for biosynthesis of heat stable antifungal factor (HSAF)

(2015) Andrew S. Olson et al.   RSC Advances

Identification of a small molecule signaling factor that regulates the biosynthesis of the antifungal polycyclic tetramate macrolactam HSAF in Lysobacter enzymogenes

(2014) Yong Han et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Complex regulation of secondary metabolism controlling pathogenicity in the phytopathogenic fungusAlternaria alternata

(2014) Shinya Takaoka et al.   NEW PHYTOLOGIST

Lysobacter enzymogenes Uses Two Distinct Cell-Cell Signaling Systems for Differential Regulation of Secondary-Metabolite Biosynthesis and Colony Morphology

(2013) Guoliang Qian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thickening of the cell wall in macrolide-resistant Staphylococcus aureus

(2013) Yukiyoshi Hyo et al.   Medical Molecular Morphology

Populusendo-beta-mannanase PtrMAN6 plays a role in coordinating cell wall remodeling with suppression of secondary wall thickening through generation of oligosaccharide signals

(2013) Yunjun Zhao et al.   PLANT JOURNAL

Transcriptomics of the Rice Blast Fungus Magnaporthe oryzae in Response to the Bacterial Antagonist Lysobacter enzymogenes Reveals Candidate Fungal Defense Response Genes

(2013) Sandra M. Mathioni et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Expression Turnover Profiling To Monitor the Antifungal Activities of Amphotericin B, Voriconazole, and Micafungin against Aspergillus fumigatus

(2012) Yanan Zhao et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

PP2A holoenzymes negatively and positively regulate cell cycle progression by dephosphorylating pocket proteins and multiple CDK substrates

(2012) Alison Kurimchak et al.   GENE

Sphingolipids: regulators of crosstalk between apoptosis and autophagy

(2012) Megan M. Young et al.   JOURNAL OF LIPID RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

3-Hydroxylation of the polycyclic tetramate macrolactam in the biosynthesis of antifungal HSAF from Lysobacter enzymogenes C3

(2012) Yaoyao Li et al.   MedChemComm

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Globular Adiponectin, Acting via AdipoR1/APPL1, Protects H9c2 Cells from Hypoxia/Reoxygenation-Induced Apoptosis

(2011) Min Park et al.   PLoS One

Biosynthesis of HSAF, a Tetramic Acid-Containing Macrolactam from Lysobacter enzymogenes

(2010) Lili Lou et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The fungal cell wall: Modern concepts of its composition and biological function

(2010) E. P. Feofilova   MICROBIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Identification and Characterization of Lysobacter enzymogenes as a Biological Control Agent Against Some Fungal Pathogens

(2009) Guo-liang QIAN et al.   Agricultural Sciences in China

cAMP signaling pathway controls glycogen metabolism in Neurospora crassa by regulating the glycogen synthase gene expression and phosphorylation

(2009) Fernanda Zanolli Freitas et al.   FUNGAL GENETICS AND BIOLOGY

A genome-based analysis of amino acid metabolism in the biotrophic plant pathogen Ustilago maydis

(2008) Michael P. McCann et al.   FUNGAL GENETICS AND BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Induction of Cell Wall Thickening by the Antifungal Compound Dihydromaltophilin Disrupts Fungal Growth and is Mediated by Sphingolipid Biosynthesis

(2008) SHAOJIE LI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY