Phylogenomics and barcoding of Panax: toward the identification of ginseng species
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Phylogenomics and barcoding of Panax: toward the identification of ginseng species
Authors
Keywords
Barcoding, Genome, Ginseng, Marker, mPTP, NGS, <em class=EmphasisTypeItalic >Panax</em>, Phylogenomics, Plastid
Journal
BMC EVOLUTIONARY BIOLOGY
Volume 18, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-04-04
DOI
10.1186/s12862-018-1160-y
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Bayesian species identification under the multispecies coalescent provides significant improvements to DNA barcoding analyses
- (2017) Ziheng Yang et al. MOLECULAR ECOLOGY
- Multispecies coalescent delimits structure, not species
- (2017) Jeet Sukumaran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolution of the Araliaceae family inferred from complete chloroplast genomes and 45S nrDNAs of 10 Panax-related species
- (2017) Kyunghee Kim et al. Scientific Reports
- Veronica officinalis Product Authentication Using DNA Metabarcoding and HPLC-MS Reveals Widespread Adulteration with Veronica chamaedrys
- (2017) Ancuta C. Raclariu et al. Frontiers in Pharmacology
- Comparative authentication of Hypericum perforatum herbal products using DNA metabarcoding, TLC and HPLC-MS
- (2017) Ancuta Cristina Raclariu et al. Scientific Reports
- From barcodes to genomes: extending the concept of DNA barcoding
- (2016) Eric Coissac et al. MOLECULAR ECOLOGY
- Strategies for complete plastid genome sequencing
- (2016) Alex D. Twyford et al. Molecular Ecology Resources
- Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
- (2016) Polina Yu Novikova et al. NATURE GENETICS
- Development of Highly Transferable Microsatellites for Panax ginseng (Araliaceae) Using Whole-Genome Data
- (2016) Peng Jiang et al. Applications in Plant Sciences
- The complete chloroplast genome sequence ofHelwingia himalaica(Helwingiaceae, Aquifoliales) and a chloroplast phylogenomic analysis of the Campanulidae
- (2016) Xin Yao et al. PeerJ
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment
- (2015) J. D. Stephens et al. AMERICAN JOURNAL OF BOTANY
- Phylogenomic analyses of species relationships in the genusSabal(Arecaceae) using targeted sequence capture
- (2015) Karolina Heyduk et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- The impacts of polyploidy, geographic and ecological isolations on the diversification of Panax (Araliaceae)
- (2015) Feng-Xue Shi et al. BMC PLANT BIOLOGY
- Resource investigation of traditional medicinal plant Panax japonicus (T.Nees) C.A. Mey and its varieties in China
- (2015) Shaopeng Zhang et al. JOURNAL OF ETHNOPHARMACOLOGY
- Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern AfricanOxalis(Oxalidaceae)
- (2015) Roswitha Schmickl et al. Molecular Ecology Resources
- obitools: aunix-inspired software package for DNA metabarcoding
- (2015) Frédéric Boyer et al. Molecular Ecology Resources
- An improved method for chloroplast genome sequencing in non-model forest tree species
- (2015) Fang K. Du et al. Tree Genetics & Genomes
- Using phylogenomics to resolve mega-families: An example from Compositae
- (2015) Jennifer R. Mandel et al. Journal of Systematics and Evolution
- The complete chloroplast genome sequence of the evergreen plant Dendropanax dentiger (Araliaceae)
- (2015) Li Wang et al. Mitochondrial DNA Part A
- The complete chloroplast genome sequence of Schefflera octophylla
- (2015) Xuefeng Zong et al. Mitochondrial DNA Part A
- The complete chloroplast genome sequence of Panax vietnamensis Ha et Grushv (Araliaceae)
- (2015) Binh Nguyen et al. Mitochondrial DNA Part A
- Comprehensive Survey of Genetic Diversity in Chloroplast Genomes and 45S nrDNAs within Panax ginseng Species
- (2015) Kyunghee Kim et al. PLoS One
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships
- (2014) Hui Huang et al. BMC EVOLUTIONARY BIOLOGY
- A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs
- (2014) Wenpan Dong et al. BMC GENETICS
- Evidence of genome duplication revealed by sequence analysis of multi-loci expressed sequence tag–simple sequence repeat bands in Panax ginseng Meyer
- (2014) Nam-Hoon Kim et al. Journal of Ginseng Research
- Genome and Metagenome Sequencing: Using the Human Methyl-Binding Domain to Partition Genomic DNA Derived from Plant Tissues
- (2014) Erbay Yigit et al. Applications in Plant Sciences
- Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics
- (2014) Kevin Weitemier et al. Applications in Plant Sciences
- A Target Enrichment Method for Gathering Phylogenetic Information from Hundreds of Loci: An Example from the Compositae
- (2014) Jennifer R. Mandel et al. Applications in Plant Sciences
- A general species delimitation method with applications to phylogenetic placements
- (2013) Jiajie Zhang et al. BIOINFORMATICS
- The origin of the early differentiation of Ivies (Hedera L.) and the radiation of the Asian Palmate group (Araliaceae)
- (2013) Virginia Valcárcel et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke
- (2013) Dan G. Bock et al. NEW PHYTOLOGIST
- A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
- (2013) Sujeevan Ratnasingham et al. PLoS One
- Comparative Chloroplast Genomes of Camellia Species
- (2013) Jun-Bo Yang et al. PLoS One
- Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications
- (2013) Rong Li et al. PLoS One
- Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets
- (2013) Tomochika Fujisawa et al. SYSTEMATIC BIOLOGY
- Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae
- (2012) P. Roxanne Steele et al. AMERICAN JOURNAL OF BOTANY
- Evolutionary relationship of Panax ginseng and P. quinquefolius inferred from sequencing and comparative analysis of expressed sequence tags
- (2012) Hong-Il Choi et al. GENETIC RESOURCES AND CROP EVOLUTION
- PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
- (2012) R. Lanfear et al. MOLECULAR BIOLOGY AND EVOLUTION
- Spider: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
- (2012) SAMUEL D. J. BROWN et al. Molecular Ecology Resources
- Phylogeny reconstruction in the Caesalpinieae grade (Leguminosae) based on duplicated copies of the sucrose synthase gene and plastid markers
- (2012) Vincent Manzanilla et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens
- (2012) Tiina Särkinen et al. PLoS One
- Development of Reproducible EST-derived SSR Markers and Assessment of Genetic Diversity in Panax ginseng Cultivars and Related Species
- (2012) Hong-Il Choi et al. Journal of Ginseng Research
- Development and characterization of microsatellite markers for Panax notoginseng (Araliaceae), a Chinese traditional herb
- (2011) Han Liu et al. AMERICAN JOURNAL OF BOTANY
- Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
- (2011) Shannon C. K. Straub et al. AMERICAN JOURNAL OF BOTANY
- Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
- (2011) Xiaolin Hao et al. BIOINFORMATICS
- ABGD, Automatic Barcode Gap Discovery for primary species delimitation
- (2011) N. PUILLANDRE et al. MOLECULAR ECOLOGY
- Field guide to next-generation DNA sequencers
- (2011) TRAVIS C. GLENN Molecular Ecology Resources
- Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1
- (2010) Thomas J. Givnish et al. ANNALS OF THE MISSOURI BOTANICAL GARDEN
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages
- (2010) Kenneth G Karol et al. BMC EVOLUTIONARY BIOLOGY
- Genetic diversity and differentiation of cultivated ginseng (Panax ginseng C. A. Meyer) populations in North-east China revealed by inter-simple sequence repeat (ISSR) markers
- (2010) Shan Li et al. GENETIC RESOURCES AND CROP EVOLUTION
- Chloroplast genome sequences from total DNA for plant identification
- (2010) Catherine J. Nock et al. PLANT BIOTECHNOLOGY JOURNAL
- DNA Barcoding ofPanaxSpecies
- (2010) Yunjuan Zuo et al. PLANTA MEDICA
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
- (2009) Matthew Parks et al. BMC BIOLOGY
- Development and characterization of new microsatellite markers in Panax ginseng (C.A. Meyer) from BAC end sequences
- (2009) Nguyen Van Dan et al. CONSERVATION GENETICS
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- A New Species of Panax L. (Araliaceae) from Sikkim Himalaya, India
- (2009) Shiva Kumar Sharma et al. SYSTEMATIC BOTANY
- Panax ginsengnatural populations: their past, current state and perspectives1
- (2008) Yuri N ZHURAVLEV et al. ACTA PHARMACOLOGICA SINICA
- Differentiation of the root of Cultivated Ginseng, Mountain Cultivated Ginseng and Mountain Wild Ginseng using FT-IR and two-dimensional correlation IR spectroscopy
- (2008) Dan Liu et al. JOURNAL OF MOLECULAR STRUCTURE
- Testing the Reliability of Genetic Methods of Species Identification via Simulation
- (2008) Howard A. Ross et al. SYSTEMATIC BIOLOGY
- The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification
- (2008) Rudolf Meier et al. SYSTEMATIC BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now