A general species delimitation method with applications to phylogenetic placements
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A general species delimitation method with applications to phylogenetic placements
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 29, Issue 22, Pages 2869-2876
Publisher
Oxford University Press (OUP)
Online
2013-08-30
DOI
10.1093/bioinformatics/btt499
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets
- (2013) Tomochika Fujisawa et al. SYSTEMATIC BIOLOGY
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Bioinformatic challenges for DNA metabarcoding of plants and animals
- (2012) ERIC COISSAC et al. MOLECULAR ECOLOGY
- Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats
- (2012) J. A. Esselstyn et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- Coalescent-based species delimitation in an integrative taxonomy
- (2012) Matthew K. Fujita et al. TRENDS IN ECOLOGY & EVOLUTION
- Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
- (2012) Douglas W. Yu et al. Methods in Ecology and Evolution
- Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis
- (2011) Patrick D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
- (2011) Xiaolin Hao et al. BIOINFORMATICS
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
- (2011) Y. Sun et al. BRIEFINGS IN BIOINFORMATICS
- A comparison of DNA-based methods for delimiting species in a Cretan land snail radiation reveals shortcomings of exclusively molecular taxonomy
- (2011) Jan Sauer et al. CLADISTICS
- A Dirichlet Process Prior for Estimating Lineage-Specific Substitution Rates
- (2011) T. A. Heath et al. MOLECULAR BIOLOGY AND EVOLUTION
- ABGD, Automatic Barcode Gap Discovery for primary species delimitation
- (2011) N. PUILLANDRE et al. MOLECULAR ECOLOGY
- ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time
- (2011) Yunpeng Cai et al. NUCLEIC ACIDS RESEARCH
- Toward a DNA Taxonomy of Alpine Rhithrogena (Ephemeroptera: Heptageniidae) Using a Mixed Yule-Coalescent Analysis of Mitochondrial and Nuclear DNA
- (2011) Laurent Vuataz et al. PLoS One
- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
- (2011) Simon A. Berger et al. SYSTEMATIC BIOLOGY
- Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data
- (2011) Jeff R. Powell Methods in Ecology and Evolution
- Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description
- (2010) Paul Z. Goldstein et al. BIOESSAYS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- ETE: a python Environment for Tree Exploration
- (2010) Jaime Huerta-Cepas et al. BMC BIOINFORMATICS
- The integrative future of taxonomy
- (2010) Jose M. Padial et al. Frontiers in Zoology
- Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration
- (2010) A. Papadopoulou et al. MOLECULAR BIOLOGY AND EVOLUTION
- SpedeSTEM: a rapid and accurate method for species delimitation
- (2010) DANIEL D. ENCE et al. Molecular Ecology Resources
- Divergence times and colonization of the Canary Islands by Gallotia lizards
- (2010) Siobhan C. Cox et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Bayesian species delimitation using multilocus sequence data
- (2010) Z. Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats
- (2010) Bryan C. Carstens et al. SYSTEMATIC BIOLOGY
- INDELible: A Flexible Simulator of Biological Sequence Evolution
- (2009) W. Fletcher et al. MOLECULAR BIOLOGY AND EVOLUTION
- Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation
- (2009) Michael T. Monaghan et al. SYSTEMATIC BIOLOGY
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
- (2008) Z. Liu et al. NUCLEIC ACIDS RESEARCH
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started