Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

(2012) Noah M Reid et al.   BMC EVOLUTIONARY BIOLOGY

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

(2012) JULIAN R. DUPUIS et al.   MOLECULAR ECOLOGY

The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna

(2012) C. Q. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats

(2012) J. A. Esselstyn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage

(2012) F. Hailer et al.   SCIENCE

The Effect of Geographical Scale of Sampling on DNA Barcoding

(2012) J. Bergsten et al.   SYSTEMATIC BIOLOGY

Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals

(2011) Arong Luo et al.   BMC GENOMICS

Deep mtDNA subdivision within Linnean species in an endemic radiation of tiger beetles from New Zealand (genus Neocicindela)

(2011) Joan Pons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

(2011) R. S. Etienne et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Determining Species Boundaries in a World Full of Rarity: Singletons, Species Delimitation Methods

(2011) Gwynne S. Lim et al.   SYSTEMATIC BIOLOGY

Accuracy and Precision of Species Trees: Effects of Locus, Individual, and Base Pair Sampling on Inference of Species Trees in Lizards of the Liolaemus darwinii Group (Squamata, Liolaemidae)

(2011) Arley Camargo et al.   SYSTEMATIC BIOLOGY

Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data

(2011) Jeff R. Powell   Methods in Ecology and Evolution

Using Population Genetic Theory and DNA Sequences for Species Detection and Identification in Asexual Organisms

(2010) C. William Birky et al.   PLoS One

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats

(2010) Bryan C. Carstens et al.   SYSTEMATIC BIOLOGY

Inferring evolutionarily significant units of bacterial diversity from broad environmental surveys of single-locus data

(2009) T. G. Barraclough et al.   Biology Letters

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma)

(2009) A. D. Leache et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sampling Error Does Not Invalidate the Yule-Coalescent Model for Species Delimitation. A Response to Lohse (2009)

(2009) Anna Papadopoulou et al.   SYSTEMATIC BIOLOGY

Can mtDNA Barcodes Be Used to Delimit Species? A Response to Pons et al. (2006)

(2009) Konrad Lohse   SYSTEMATIC BIOLOGY

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

(2009) Michael T. Monaghan et al.   SYSTEMATIC BIOLOGY

New Heuristic Methods for Joint Species Delimitation and Species Tree Inference

(2009) Brian C. O'Meara   SYSTEMATIC BIOLOGY

Multilocus phylogeography and phylogenetics using sequence-based markers

(2008) Patrícia H. Brito et al.   GENETICA

Phylogeography: retrospect and prospect

(2008) John C. Avise   JOURNAL OF BIOGEOGRAPHY

Speciation and DNA barcodes: testing the effects of dispersal on the formation of discrete sequence clusters

(2008) A. Papadopoulou et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA barcoding the floras of biodiversity hotspots

(2008) R. Lahaye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Density-dependent diversification in North American wood warblers

(2008) D. L Rabosky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Density-Dependent Cladogenesis in Birds

(2008) Albert B Phillimore et al.   PLOS BIOLOGY

Using phylogeographic analyses of gene trees to test species status and processes

(2003) Alan R. Templeton   MOLECULAR ECOLOGY