Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence

Gene-expression profile of developing pollen tube of Pyrus bretschneideri

(2016) Hongsheng Zhou et al.   GENE EXPRESSION PATTERNS

Transgenic Suppression of AGAMOUS Genes in Apple Reduces Fertility and Increases Floral Attractiveness

(2016) Amy L. Klocko et al.   PLoS One

Comparative phylogenetic analysis and transcriptional profiling of MADS-box gene family identified DAM and FLC-like genes in apple (Malusx domestica)

(2016) Gulshan Kumar et al.   Scientific Reports

A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch]

(2015) Christina E Wells et al.   BMC PLANT BIOLOGY

Genome-wide identification and analysis of the MADS-box gene family in apple

(2015) Yi Tian et al.   GENE

Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes

(2015) Diogo Denardi Porto et al.   JOURNAL OF EXPERIMENTAL BOTANY

Two MYB transcription factors regulate flavonoid biosynthesis in pear fruit (Pyrus bretschneideriRehd.)

(2015) Rui Zhai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifoliawhite pear group) flower bud

(2015) Qingfeng Niu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A standard nomenclature for gene designation in the Rosaceae

(2015) Sook Jung et al.   Tree Genetics & Genomes

PyMYB10 and PyMYB10.1 Interact with bHLH to Enhance Anthocyanin Accumulation in Pears

(2015) Shouqian Feng et al.   PLoS One

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Characterization of TM8, a MADS-box gene expressed in tomato flowers

(2014) Margherita Daminato et al.   BMC PLANT BIOLOGY

Overexpression of the kiwifruit SVP3 gene affects reproductive development and suppresses anthocyanin biosynthesis in petals, but has no effect on vegetative growth, dormancy, or flowering time

(2014) Rongmei Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis of the MADS-box gene family in Brassica rapa (Chinese cabbage)

(2014) Weike Duan et al.   MOLECULAR GENETICS AND GENOMICS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Histone modification and signalling cascade of thedormancy-associated MADS-boxgene,PpMADS13-1, in Japanese pear (Pyrus pyrifolia) during endodormancy

(2014) TAKANORI SAITO et al.   PLANT CELL AND ENVIRONMENT

Expression differences of anthocyanin biosynthesis genes reveal regulation patterns for red pear coloration

(2014) Ya-nan Yang et al.   PLANT CELL REPORTS

The Draft Genome Sequence of European Pear (Pyrus communis L. ‘Bartlett’)

(2014) David Chagné et al.   PLoS One

Characterization of 10 MADS-box genes from Pyrus pyrifolia and their differential expression during fruit development and ripening

(2013) Benjamin Ewa Ubi et al.   GENE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor

(2013) Magnus D. Vigeland et al.   NEW PHYTOLOGIST

Transcriptome Analysis of Japanese Pear (Pyrus pyrifolia Nakai) Flower Buds Transitioning Through Endodormancy

(2013) Songling Bai et al.   PLANT AND CELL PHYSIOLOGY

Functional Conservation of MIKC*-Type MADS Box Genes in Arabidopsis and Rice Pollen Maturation

(2013) Y. Liu et al.   PLANT CELL

Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis

(2013) Alexander Maier et al.   PLANT JOURNAL

The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear

(2013) Z. Wang et al.   PLANT PHYSIOLOGY

Molecular cloning and gene expression differences of the anthocyanin biosynthesis-related genes in the red/green skin color mutant of pear (Pyrus communis L.)

(2013) Ya-nan Yang et al.   Tree Genetics & Genomes

Expression and genomic structure of the dormancy-associated MADS box genes MADS13 in Japanese pears (Pyrus pyrifolia Nakai) that differ in their chilling requirement for endodormancy release

(2013) T. Saito et al.   TREE PHYSIOLOGY

New insights into the regulation of anthocyanin biosynthesis in fruits

(2013) Laura Jaakola   TRENDS IN PLANT SCIENCE

FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes

(2013) Philip Ruelens et al.   Nature Communications

Transcriptomic analysis of ‘Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq

(2012) Guoqin Liu et al.   BMC GENOMICS

Genome-wide analysis of the MADS-box gene family in cucumber

(2012) Lifang Hu et al.   GENOME

The genome of the pear (Pyrus bretschneideri Rehd.)

(2012) J. Wu et al.   GENOME RESEARCH

PGDD: a database of gene and genome duplication in plants

(2012) Tae-Ho Lee et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

AppleSEPALLATA1/2-like genes control fruit flesh development and ripening

(2012) Hilary S. Ireland et al.   PLANT JOURNAL

Isolation and Characterization of an APETALA1-Like Gene from Pear (Pyrus pyrifolia)

(2012) Yuexue Liu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Identification of differentially expressed genes related to coloration in red/green mutant pear (Pyrus communis L.)

(2012) Jun Wu et al.   Tree Genetics & Genomes

Conservation and divergence of four kiwifruit SVP-like MADS-box genes suggest distinct roles in kiwifruit bud dormancy and flowering

(2011) Rong-Mei Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning

(2011) Maria Greco et al.   JOURNAL OF EXPERIMENTAL BOTANY

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

A putative functional MYB transcription factor induced by low temperature regulates anthocyanin biosynthesis in purple kale (Brassica Oleracea var. acephala f. tricolor)

(2011) Bin Zhang et al.   PLANT CELL REPORTS

Effects of high temperatures on UV-B/visible irradiation induced postharvest anthocyanin accumulation in ‘Yunhongli No. 1’ (Pyrus pyrifolia Nakai) pears

(2011) Dong Zhang et al.   SCIENTIA HORTICULTURAE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome survey and characterization of MADS-box gene family in maize and sorghum

(2010) Yang Zhao et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Differential Gene Expression Analysis of Yunnan Red Pear, Pyrus Pyrifolia, During Fruit Skin Coloration

(2010) Xiaodong Zhang et al.   PLANT MOLECULAR BIOLOGY REPORTER

A SQUAMOSA MADS Box Gene Involved in the Regulation of Anthocyanin Accumulation in Bilberry Fruits

(2010) L. Jaakola et al.   PLANT PHYSIOLOGY

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice

(2009) Haifeng Li et al.   CELL RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Arabidopsis NAC Transcription Factor, ANAC078, Regulates Flavonoid Biosynthesis under High-light

(2009) Teruyuki Morishita et al.   PLANT AND CELL PHYSIOLOGY

MOSAIC FLORAL ORGANS1, an AGL6-Like MADS Box Gene, Regulates Floral Organ Identity and Meristem Fate in Rice

(2009) S. Ohmori et al.   PLANT CELL

The petuniaAGL6gene has aSEPALLATA-like function in floral patterning

(2009) Anneke S. Rijpkema et al.   PLANT JOURNAL

MIKC* MADS Domain Heterodimers Are Required for Pollen Maturation and Tube Growth in Arabidopsis

(2009) B. J. Adamczyk et al.   PLANT PHYSIOLOGY

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

(2009) J. A. Fawcett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The naked and the dead: The ABCs of gymnosperm reproduction and the origin of the angiosperm flower

(2009) Rainer Melzer et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Selectome: a database of positive selection

(2008) E. Proux et al.   NUCLEIC ACIDS RESEARCH

Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies

(2008) KRISTINE M. OLSEN et al.   PLANT CELL AND ENVIRONMENT

MYBL2 is a new regulator of flavonoid biosynthesis inArabidopsis thaliana

(2008) Christian Dubos et al.   PLANT JOURNAL

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

An AGAMOUS-Related MADS-Box Gene, XAL1 (AGL12), Regulates Root Meristem Cell Proliferation and Flowering Transition in Arabidopsis

(2008) R. Tapia-Lopez et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis of MIKCC-Type MADS Box Genes in Grapevine

(2008) J. Diaz-Riquelme et al.   PLANT PHYSIOLOGY

Expression analysis of anthocyanin regulatory genes in response to different light qualities in Arabidopsis thaliana

(2007) Eleonora Cominelli et al.   JOURNAL OF PLANT PHYSIOLOGY