Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor

Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses

(2012) Chuan Li et al.   BMC PLANT BIOLOGY

Evolution of Grasses and Grassland Ecosystems

(2011) Caroline A.E. Strömberg   Annual Review of Earth and Planetary Sciences

The Patterns and Causes of Variation in Plant Nucleotide Substitution Rates

(2011) Brandon Gaut et al.   Annual Review of Ecology Evolution and Systematics

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Evolution of adaptive phenotypic traits without positive Darwinian selection

(2011) A L Hughes   HEREDITY

New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins

(2011)   NEW PHYTOLOGIST

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Unlocking the Barley Genome by Chromosomal and Comparative Genomics

(2011) Klaus F.X. Mayer et al.   PLANT CELL

Transcriptome Analysis of the Vernalization Response in Barley (Hordeum vulgare) Seedlings

(2011) Aaron G. Greenup et al.   PLoS One

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty

(2010) O. Penn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Did gene family expansions during the Eocene-Oligocene boundary climate cooling play a role in Pooideae adaptation to cool climates?

(2010) SIMEN RØD SANDVE et al.   MOLECULAR ECOLOGY

Ice recrystallization inhibition proteins of perennial ryegrass enhance freezing tolerance

(2010) Chunzhen Zhang et al.   PLANTA

Mutation rate is linked to diversification in birds

(2010) R. Lanfear et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic analyses reveal the shady history of C4 grasses

(2010) E. J. Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Drought response in the spikes of barley: gene expression in the lemma, palea, awn, and seed

(2009) Tilahun Abebe et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage

(2009) Peiguo Guo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Speciation as an active force in promoting genetic evolution

(2009) Chris Venditti et al.   TRENDS IN ECOLOGY & EVOLUTION

Tracking the evolution of a cold stress associated gene family in cold tolerant grasses

(2008) Simen R Sandve et al.   BMC EVOLUTIONARY BIOLOGY

Light has a specific role in modulating Arabidopsis gene expression at low temperature

(2008) Arto J Soitamo et al.   BMC PLANT BIOLOGY

Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of Barley (Hordeum vulgare L.)

(2008) Livia Tommasini et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Rpl33, a Nonessential Plastid-Encoded Ribosomal Protein in Tobacco, Is Required under Cold Stress Conditions

(2008) M. Rogalski et al.   PLANT CELL

Differences in spontaneous mutation frequencies as a function of environmental stress in soil fungi at "Evolution Canyon," Israel

(2008) B. C. Lamb et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA