- Home
- Publications
- Publication Search
- Publication Details
Title
Ecogenomics and Taxonomy of Cyanobacteria Phylum
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-11-14
DOI
10.3389/fmicb.2017.02132
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio
- (2017) Anne-Catherine Ahn et al. PLoS One
- The complex effects of ocean acidification on the prominent N2-fixing cyanobacteriumTrichodesmium
- (2017) Haizheng Hong et al. SCIENCE
- Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae , isolated from coral reef seawater off Ishigaki Island, Japan
- (2017) A.K.M. Rohul Amin et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
- (2017) David W. Waite et al. Frontiers in Microbiology
- A curated database of cyanobacterial strains relevant for modern taxonomy and phylogenetic studies
- (2017) Vitor Ramos et al. Scientific Data
- Description of Endozoicomonas arenosclerae sp. nov. using a genomic taxonomy approach
- (2016) Luciana R. Appolinario et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features
- (2016) F. H. Coutinho et al. ARCHIVES OF MICROBIOLOGY
- Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.
- (2016) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?
- (2016) George M. Garrity JOURNAL OF CLINICAL MICROBIOLOGY
- Phylogeny-aware identification and correction of taxonomically mislabeled sequences
- (2016) Alexey M. Kozlov et al. NUCLEIC ACIDS RESEARCH
- Microbial Community Profile and Water Quality in a Protected Area of the Caatinga Biome
- (2016) Fabyano Alvares Cardoso Lopes et al. PLoS One
- Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
- (2016) Gregory K. Farrant et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Scaling laws predict global microbial diversity
- (2016) Kenneth J. Locey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Based Microbial Taxonomy Coming of Age
- (2016) Philip Hugenholtz et al. Cold Spring Harbor Perspectives in Biology
- Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
- (2016) Karthik Anantharaman et al. Nature Communications
- Genome-Based Taxonomic Classification of Bacteroidetes
- (2016) Richard L. Hahnke et al. Frontiers in Microbiology
- Comparative genomics ofSynechococcusand proposal of the new genusParasynechococcus
- (2016) Felipe Coutinho et al. PeerJ
- A catalogue of 136 microbial draft genomes from Red Sea metagenomes
- (2016) Mohamed F. Haroon et al. Scientific Data
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- Microbial species delineation using whole genome sequences
- (2015) Neha J. Varghese et al. NUCLEIC ACIDS RESEARCH
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Microbial Malaise: How Can We Classify the Microbiome?
- (2015) Robert G. Beiko TRENDS IN MICROBIOLOGY
- The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park
- (2015) Eric D. Becraft et al. Frontiers in Microbiology
- Back from the dead; the curious tale of the predatory cyanobacteriumVampirovibrio chlorellavorus
- (2015) Rochelle M. Soo et al. PeerJ
- Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae
- (2015) Nurhidayu Al-saari et al. PLoS One
- Differing responses of marine N2 fixers to warming and consequences for future diazotroph community structure
- (2014) FX Fu et al. AQUATIC MICROBIAL ECOLOGY
- Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
- (2014) Cristiane C. Thompson et al. ARCHIVES OF MICROBIOLOGY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
- (2014) Pere Puigbò et al. BMC BIOLOGY
- An Expanded Genomic Representation of the Phylum Cyanobacteria
- (2014) Rochelle M. Soo et al. Genome Biology and Evolution
- Proposal to change General Consideration 5 and Principle 2 of the International Code of Nomenclature of Prokaryotes
- (2014) A. Oren et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.
- (2014) R. S. Gupta et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
- (2014) J. Chun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Connecting thermal physiology and latitudinal niche partitioning in marine Synechococcus
- (2014) Justine Pittera et al. ISME Journal
- A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights
- (2014) Q.-L. Qin et al. JOURNAL OF BACTERIOLOGY
- Reductive genome evolution at both ends of the bacterial population size spectrum
- (2014) Bérénice Batut et al. NATURE REVIEWS MICROBIOLOGY
- Prochlorococcus: the structure and function of collective diversity
- (2014) Steven J. Biller et al. NATURE REVIEWS MICROBIOLOGY
- Genome sequence-based species delimitation with confidence intervals and improved distance functions
- (2013) Jan P Meier-Kolthoff et al. BMC BIOINFORMATICS
- Microbial genomic taxonomy
- (2013) Cristiane C Thompson et al. BMC GENOMICS
- Genomic Taxonomy of the Genus Prochlorococcus
- (2013) Cristiane C. Thompson et al. MICROBIAL ECOLOGY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Processes and patterns of oceanic nutrient limitation
- (2013) C. M. Moore et al. Nature Geoscience
- LPSN—list of prokaryotic names with standing in nomenclature
- (2013) Aidan C. Parte NUCLEIC ACIDS RESEARCH
- Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
- (2013) P. M. Shih et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
- (2013) P. Flombaum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
- (2013) Sara C Di Rienzi et al. eLife
- The evolution of nitrogen fixation in cyanobacteria
- (2012) Natasha Latysheva et al. BIOINFORMATICS
- Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
- (2012) Martin Wu et al. BIOINFORMATICS
- Ecology and Physics of Bacterial Chemotaxis in the Ocean
- (2012) Roman Stocker et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Ocean acidification slows nitrogen fixation and growth in the dominant diazotroph Trichodesmium under low-iron conditions
- (2012) D. Shi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
- (2012) V. Iverson et al. SCIENCE
- Response to Gribaldo and Brochier-Armanet: time for order in microbial systematics
- (2012) George M. Garrity et al. TRENDS IN MICROBIOLOGY
- Time for order in microbial systematics
- (2012) Simonetta Gribaldo et al. TRENDS IN MICROBIOLOGY
- A call to action for the International Committee on Systematics of Prokaryotes
- (2012) Iain C. Sutcliffe et al. TRENDS IN MICROBIOLOGY
- Grappling with Proteus: population level approaches to understanding microbial diversity
- (2012) Mallory J. Choudoir et al. Frontiers in Microbiology
- The origin of multicellularity in cyanobacteria
- (2011) Bettina E Schirrmeister et al. BMC EVOLUTIONARY BIOLOGY
- Nitrogen fixation by marine cyanobacteria
- (2011) Jonathan P. Zehr TRENDS IN MICROBIOLOGY
- Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
- (2010) Alexander F. Auch et al. Standards in Genomic Sciences
- Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
- (2010) Alexander F. Auch et al. Standards in Genomic Sciences
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Protein-based organelles in bacteria: carboxysomes and related microcompartments
- (2008) Todd O. Yeates et al. NATURE REVIEWS MICROBIOLOGY
- CLIMATE: Blooms Like It Hot
- (2008) H. W. Paerl et al. SCIENCE
- The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
- (2008) Pablo Yarza et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- A simple, fast, and accurate method of phylogenomic inference
- (2008) Martin Wu et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now