Back from the dead; the curious tale of the predatory cyanobacteriumVampirovibrio chlorellavorus

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

(2013) P. M. Shih et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

By their genes ye shall know them: genomic signatures of predatory bacteria

(2012) Zohar Pasternak et al.   ISME Journal

Evolution of Conjugation and Type IV Secretion Systems

(2012) Julien Guglielmini et al.   MOLECULAR BIOLOGY AND EVOLUTION

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Enzymatic cell wall degradation of Chlorella vulgaris and other microalgae for biofuels production

(2012) Henri G. Gerken et al.   PLANTA

Role of Fibronectin in the Adhesion of Acinetobacter baumannii to Host Cells

(2012) Younes Smani et al.   PLoS One

Hydrophobic gating of mechanosensitive channel of large conductance evidenced by single-subunit resolution

(2012) J. P. Birkner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Metal Ion-Dependent Adhesion Site Motif of the Enterococcus faecalis EbpA Pilin Mediates Pilus Function in Catheter-Associated Urinary Tract Infection

(2012) H. V. Nielsen et al.   mBio

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)

(2012) Hajnalka Kiss et al.   Standards in Genomic Sciences

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1T)

(2012) Linda Meincke et al.   Standards in Genomic Sciences

Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13

(2011) Zhang Wang et al.   BMC GENOMICS

Effect of manuka honey on the expression of universal stress protein A in meticillin-resistant Staphylococcus aureus

(2011) Rowena Jenkins et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Genetically Engineered Alginate Lyase-PEG Conjugates Exhibit Enhanced Catalytic Function and Reduced Immunoreactivity

(2011) John W. Lamppa et al.   PLoS One

Posttranslational Modification of Pili upon Cell Contact Triggers N. meningitidis Dissemination

(2011) J. Chamot-Rooke et al.   SCIENCE

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Subtilisin-Like Protease AprV2 Is Required for Virulence and Uses a Novel Disulphide-Tethered Exosite to Bind Substrates

(2010) Ruth M. Kennan et al.   PLoS Pathogens

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

In Escherichia coli, MreB and FtsZ Direct the Synthesis of Lateral Cell Wall via Independent Pathways That Require PBP 2

(2009) A. Varma et al.   JOURNAL OF BACTERIOLOGY

The Catalase-Peroxidase KatG Is Required for Virulence of Xanthomonas campestris pv. campestris in a Host Plant by Providing Protection against Low Levels of H2O2

(2009) T. Jittawuttipoka et al.   JOURNAL OF BACTERIOLOGY

Biological Diversity of Prokaryotic Type IV Secretion Systems

(2009) C. E. Alvarez-Martinez et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distinct roles of the FliI ATPase and proton motive force in bacterial flagellar protein export

(2008) Tohru Minamino et al.   NATURE