Article
Microbiology
Wei-Sheng Huang, Li-Ting Wang, Jwo-Sheng Chen, Yen-Ting Chen, Sean Ting-Shyang Wei, Yin-Ru Chiang, Pei-Ling Wang, Tzong-Huei Lee, Shih-Ting Lin, Lina Huang, Wung Yang Shieh
Summary: A nitrogen-fixing marine bacterium strain Vibrio nitrifigilis sp. nov. was isolated from the sediment of Taiwan, showing unique characteristics in growth requirements and genetic composition, presenting a distinct lineage within the Vibrionaceae family. The establishment of this novel species was supported by phylogenetic, genomic, and phenotypic analyses.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
(2021)
Article
Microbiology
Wei Wang, Wenbin Zhao, Bingbing Cao, Ronghua Liu, Haojin Cheng, Peng Tian, Jiaguang Xiao, Ziqing Xu, Xiaolei Wang, Wentao Niu
Summary: A Gram-straining-negative, facultatively anaerobic, motile marine bacterium with a polar flagellum and rod-shaped morphology, named S4M6T, was isolated from surface seawater in Dongshan Bay, Fujian, PR China. Through phylogenetic and phylogenomic analysis, it was determined that S4M6T belongs to the genus Vibrio, and its closest relatives were Vibrio marisflavi CGMCC 1.8994T, Vibrio variabilis LMG 25438T, Vibrio gangliei SZDIS-1T, and Vibrio aestivus M22T. Based on polyphasic evidence, S4M6T is proposed as a novel species of Vibrio, named Vibrio sinus sp. nov. The importance of this article is rated 8 out of 10.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Chi Young Hwang, Sung Man Seo, Eui-Sang Cho, Young-Do Nam, So-Lim Park, Seong-Il Lim, Myung-Ji Seo
Summary: In this study, a novel bacterial strain MBLB1776(T) was isolated from marine mud in Uljin, the Republic of Korea. The strain was identified as a new species within the genus Paenibacillus, named Paenibacillus aurantius sp. nov. It was found that MBLB1776(T) produced carotenoid pigments, giving the cells an orange color.
Article
Microbiology
Ruihong Guo, Yalin Yuan, Ronghua Liu, Wen Hong, Yi Zhou, Wenbin Zhao, Xiaolei Wang, Xiao-Hua Zhang
Summary: Two novel strains of marine bacteria, designated DBSS07T and ZSDZ65T, were isolated from different marine environments. Phylogenetic analysis revealed their placement within the genus Vibrio. The strains exhibited different growth conditions and fatty acid compositions, prompting the proposal of two new species within the genus Vibrio: V. paucivorans sp. nov. (type strain DBSS07T) and V. qingdaonensis sp. nov. (type strain ZSDZ65T).
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Lei Shi, Kunlian Mo, Shixiang Bao, Qingjuan Wu, Chunmei Xue, Huiqin Huang
Summary: The bacterium HB182678(T) isolated from brown algae in Hainan province, China, belongs to the genus Mangrovicoccus and is proposed as a new species, Mangrovicoccus algicola sp. nov. It shows a wide range of growth conditions in terms of temperature, pH, and salt concentration, with specific isoprenoid quinone and fatty acid components.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Minji Kim, Ki-Eun Lee, In-Tae Cha, Soo-Je Park
Summary: Strain M1(T) is a Gram-stain-negative, facultatively anaerobic bacterium belonging to the genus Draconibacterium, with distinct characteristics compared to other species within the genus.
CURRENT MICROBIOLOGY
(2021)
Article
Microbiology
Qunfang Yu, Yanxiang Qi, Jinji Pu
Summary: Strain YQF-2(T) is a novel bacterium isolated from coastal sediment in Jiangsu Province, belonging to the genus Rheinheimera. It showed closest phylogenetic relationship with Rheinheimera pacifica KMM 1406(T) and can be considered as a new species named Rheinheimera lutimaris sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Neak Muhammad, Tra T. H. Nguyen, Yong-Jae Lee, Jaeho Ko, Forbes Avila, Song-Gun Kim
Summary: A new species of Gram-stain-negative facultative anaerobic motile bacterium, designated Vibrio ostreae sp. nov., was isolated from the gut of an oyster collected in the Yellow Sea, Republic of Korea. Phylogenetic analysis and whole genome sequencing revealed its distinctiveness from closely related strains in the genus Vibrio.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Qiliang Lai, Xiaoteng Fu, Jianning Wang, Chunming Dong, Liping Wang, Wanpeng Wang, Zongze Shao
Summary: A novel Alcanivorax-related strain, designated 6-D-6T, was isolated from the surface seawater collected around Xiamen Island. The strain belongs to the genus Alcanivorax and represents a new species, named Alcanivorax xiamenensis sp. nov., based on phenotypic and genotypic characteristics. The type strain is 6-D-6T (=MCCC 1A01359T=KCTC 92480T).
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Wei-Sheng Huang, Li-Ting Wang, Jwo-Sheng Chen, Yen-Ting Chen, Sean Ting-Shyang Wei, Yin-Ru Chiang, Pei-Ling Wang, Tzong-Huei Lee, Shih-Ting Lin, Lina Huang, Wung Yang Shieh
Summary: A novel marine nitrogen-fixing bacterium, Vibrio salinus sp. nov., was isolated from the lagoon sediment of Dongsha Island, Taiwan. This strain is capable of anaerobic growth by fixing N-2 as the sole nitrogen source.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
(2022)
Article
Microbiology
Qi Yin, Jinyou Liang, Xiaoli Zheng, Yu Wang, Zhi-Man Song, Yu Zhang, Ying Xu
Summary: Strain XY-114(T) is a novel symbiotic bacterium isolated from the cerata of Onchidium marine invertebrate species in the South China Sea, belonging to the genus Algibacter. It is aerobic, Gram-negative, non-motile, and short rod-shaped, with specific growth conditions and characteristics including fatty acid composition and DNA content.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Yan Xu, Jin Li, Yu Hu, Haibin Li, Tao Peng, Mingqi Zhong, Zhong Hu
Summary: The bacterium HL2-2(T) isolated from the surface of the brown alga in China belongs to the genus Winogradskyella. It has moderate growth conditions and specific fatty acid composition, making it identified as a novel species.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Yan-Jiao Zhang, Hai-Ning Sun, Ting-Ting Xu, Dian-Li Zhao, Chun-Mei Yu, Yi Zhang, Xi-Ying Zhang, Xiu-Lan Chen, Yu-Qiang Zhang, Fang Zhao
Summary: A novel marine bacterium capable of secreting 1,3-xylanases, designated as strain HB14(T), was identified in this study. The strain plays an important role in the degradation and recycling of 1,3-xylan in the ocean. Four 1,3-xylanases secreted by HB14(T) were identified, and the biochemical characteristics of two of them were studied.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Trudy -Ann Grant, Jane M. Jayakumar, Mario Lopez-Perez, Salvador Almagro-Moreno
Summary: A novel strain of Gram-stain-negative, rod-shaped bacteria, named Vibrio floridensis IRLE0018, was isolated from a cyanobacterial bloom in the Indian River Lagoon (IRL) in Florida, USA. This strain is genetically distinct from other known species within the Vibrio genus and is closely related to the emergent human pathogen, Vibrio vulnificus. The complete genome sequencing of V. floridensis IRLE0018 revealed the presence of antibiotic resistance genes and virulence factors, but its pathogenic potential is limited compared to V. vulnificus.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Feilu Xie, Suting Zhu, Chaobo Guo, Xinyu Liu, Shan He, Weiyan Zhang
Summary: A new bacterium strain NBU1238(T) belonging to the genus Luteolibacter was isolated from marine sediment in Meishan Island, East China Sea, and named Luteolibacter marinus sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Food Science & Technology
Jose Mendez-Romero, Ricardo Reyes-Diaz, Lourdes Santiago-Lopez, Adrian Hernandez-Mendoza, Belinda Vallejo-Cordoba, Sonia G. Sayago-Ayerdi, Bruno Gomez-Gil, Aaron F. Gonzalez-Cordova
Summary: The study characterized the physicochemical and microbiota composition of artisanal Fresco cheese from Sonora, showing differences in composition among dairies and clustering of 66% of dairies based on principal component analysis. The most abundant microbiota were Firmicutes, Proteobacteria, and lactic acid bacteria, providing insights into the characterization of Fresco cheese from Sonora.
INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY
(2021)
Article
Microbiology
Iliana Guardiola-Avila, Leonor Sanchez-Buso, Evelia Acedo-Felix, Bruno Gomez-Gil, Manuel Zuniga-Cabrera, Fernando Gonzalez-Candelas, Lorena Noriega-Orozco
Summary: This study analyzed the genome composition of nine V. mimicus strains, revealing the core and accessory genes as well as phylogenetic relationships. The main virulence genes and categories were identified in different chromosomes, shedding light on the diversity and virulence potential of V. mimicus.
Article
Ecology
Bisbrian Nava-Gonzalez, Ireri Suazo-Ortuno, Perla Bibian Lopez, Yurixhi Maldonado-Lopez, Leonel Lopez-Toledo, Luciana Raggi, Gabriela Parra-Olea, Javier Alvarado-Diaz, Bruno Gomez-Gil
Summary: Skin-associated bacteria have been found to inhibit infection by the fungal pathogen Batrachochytrium dendrobatidis (Bd) in amphibians, and are related to Bd infection intensity. However, the microbial dynamics regulating Bd intensity are still not fully understood. Analysis of Bd infection and skin-associated bacteria from two co-occurring amphibian species in central Mexico revealed a negative relationship between bacterial richness and relative abundance of inhibitory Bd bacteria with Bd infection intensity, despite high prevalence of Bd in the host species. No dead or sick individuals were found during field surveys, suggesting that the individuals were able to survive and thrive with enzootic infections of Bd and their microbiota.
Article
Ecology
Amanda Barreto Campos, Leticia Costa Cavalcante, Arthur R. de Azevedo, Miguel Loiola, Amaro Emiliano Trindade Silva, Anderson Ara, Pedro Milet Meirelles
Summary: Studying coral microbial communities is crucial for estimating impacts and providing environmental management strategies. Coral genera are the main factor shaping microbial communities, and rare CPR and DPANN phyla significantly contribute to this.
Article
Biotechnology & Applied Microbiology
Ernesto Larios-Soriano, Roberto Carrillo Zavala, Lus M. Lopez, Bruno Gomez-Gil, Dariel Tovar Ramirez, Samuel Sanchez, Karla Canales, Mario A. Galaviz
Summary: The study demonstrated that SPC modulated the accessory bacteria communities and caused slight effects on the liver and gut of totoaba. This is the first study to analyze the effects of SPC on the allochthonous microbiota of subadult totoaba through new generation techniques.
JOURNAL OF APPLIED MICROBIOLOGY
(2022)
Article
Zoology
Julio C. C. Fernandez, Marianela Gastaldi, German Zapata-Hernandez, Luis M. Pardo, Fabiano L. Thompson, Eduardo Hajdu
Summary: The article describes four new species of Crellidae and discusses their relationships based on published molecular phylogenies. The new species differ from each other and known species mainly due to their spiculation. Chelae microscleres and acanthostyles may be used to infer phylogenetic relationships and verify the monophyly of Crella Gray, 1867 and Crellidae.
Article
Virology
Jean Pierre Gonzalez-Gomez, Osvaldo Lopez-Cuevas, Nohelia Castro-del Campo, Irvin Gonzalez-Lopez, Celida Isabel Martinez-Rodriguez, Bruno Gomez-Gil, Cristobal Chaidez
Summary: Two lytic Vibrio phages (vB_VpaP_AL-1 and vB_VpaS_AL-2) isolated from estuary water in Sinaloa, Mexico were found to be potential biocontrol agents against AHPND-causing V. parahaemolyticus.
Article
Virology
Blanca Taboada, Selene Zarate, Rodrigo Garcia-Lopez, Jose Esteban Munoz-Medina, Alejandro Sanchez-Flores, Alfredo Herrera-Estrella, Celia Boukadida, Bruno Gomez-Gil, Nelly Selem Mojica, Mauricio Rosales-Rivera, Angel Gustavo Salas-Lais, Rosa Maria Gutierrez-Rios, Antonio Loza, Xaira Rivera-Gutierrez, Joel Armando Vazquez-Perez, Margarita Matias-Florentino, Marissa Perez-Garcia, Santiago Avila-Rios, Juan Manuel Hurtado, Carla Ivon Herrera-Najera, Jose de Jesus Nunez-Contreras, Brenda Sarquiz-Martinez, Victor Eduardo Garcia-Arias, Maria Guadalupe Santiago-Mauricio, Bernardo Martinez-Miguel, Julissa Enciso-Ibarra, Cristobal Chaidez-Quiroz, Pavel Isa, Rosa Maria Wong-Chew, Maria-Eugenia Jimenez-Corona, Susana Lopez, Carlos F. Arias
Summary: In this study, the sequences of SARS-CoV-2 Delta variant isolates in Mexico were analyzed. The dominant sublineages were AY.20, AY.26, and AY.100, which may have originated in Mexico. These sublineages showed different geographical distributions in the country. The study highlights the importance of genomic surveillance for timely identification of emerging variants.
Article
Microbiology
Jose Antonio Magana-Lizarraga, Bruno Gomez-Gil, Jose Guadalupe Rendon-Maldonado, Francisco Delgado-Vargas, Ines Fernando Vega-Lopez, Maria Elena Baez-Flores
Summary: This study presents the first detection and genomic profiling of high-risk lineages of E. coli ST410 and ST617 from surface water in Mexico. The findings emphasize the role of surface water as a reservoir for critical pathogenic and multidrug-resistant E. coli clones, highlighting the need for surveillance and monitoring of aquatic environments using whole-genome sequencing from the One Health perspective.
Article
Microbiology
Irvin Gonzalez-Lopez, Jose Andres Medrano-Felix, Nohelia Castro-Del Campo, Osvaldo Lopez-Cuevas, Jean Pierre Gonzalez-Gomez, Jose Benigno Valdez-Torres, Jose Roberto Aguirre-Sanchez, Jaime Martinez-Urtaza, Bruno Gomez-Gil, Bertram G. Lee, Beatriz Quinones, Cristobal Chaidez
Summary: This study investigated the prevalence, levels, and genotypic diversity of Salmonella in major rivers in a significant agricultural region in northwestern Mexico. The results revealed seasonal variations in Salmonella prevalence in river water, with pH, salinity, and temperature affecting its levels. Molecular subtyping identified diverse Salmonella serovars in the river water samples.
Article
Microbiology
Osvaldo Lopez-Cuevas, Jean P. Gonzalez-Gomez, Jose R. Aguirre-Sanchez, Bruno Gomez-Gil, Edith H. Torres-Montoya, Jose A. Medrano-Felix, Celida Martinez-Rodriguez, Nohelia Castro-del Campo, Cristobal Chaidez
Summary: Researchers isolated and identified 22 bacteria and 12 bacteriophages from mosquito midgut, and found that these bacteriophages have the potential for biocontrol. However, further research is needed to confirm their effect on bacterial hosts and mosquito control.
CURRENT MICROBIOLOGY
(2022)
Article
Infectious Diseases
Rodrigo Garcia-Lopez, Xaira Rivera-Gutierrez, Mauricio Rosales-Rivera, Selene Zarate, Jose Esteban Munoz-Medina, Benjamin Roche, Alfredo Herrera-Estrella, Bruno Gomez-Gil, Alejandro Sanchez-Flores, Blanca Taboada, Carlos F. Arias
Summary: The BW.1 and its descendant BW.1.1 variants emerged in Southeast Mexico and likely originated during the fifth wave of COVID-19 in July 2022. These variants share similar immune escape mutations with the BQ.1 variant, which may contribute to their rapid spread.
Article
Environmental Sciences
Felipe A. S. Barbosa, Leonardo A. S. Brait, Felipe Hernandes Coutinho, Camilo M. Ferreira, Eduardo Freitas Moreira, Lucas de Queiroz Salles, Pedro Milet Meirelles
Summary: Aquifers are of great importance for society, economy, and ecology as they provide a significant portion of the world's freshwater supply. Analyzing microbial communities in different aquifers can help detect and predict environmental impacts. It was found that aquifer categories and low-abundant candidate taxa are strong predictors of microbial community structure.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Genetics & Heredity
Jorge Luis Batista-Roche, Bruno Gomez-Gil, Gertrud Lund, Cesar Alejandro Berlanga-Robles, Alejandra Garcia-Gasca
Summary: This study found differences in global m6A levels among SARS-CoV-2 variants, particularly a significant decrease in m6A levels in VOC delta and omicron-positive individuals compared to non-infected individuals. Individuals with complete vaccination schemes also showed significantly lower m6A levels than unvaccinated individuals.
Review
Computer Science, Artificial Intelligence
Luiz M. R. Gadelha, Pedro C. de Siracusa, Eduardo Couto Dalcin, Luis Alexandre Estevao da Silva, Douglas A. Augusto, Eduardo Krempser, Helen Michelle Affe, Raquel Lopes Costa, Maria Luiza Mondelli, Pedro Milet Meirelles, Fabiano Thompson, Marcia Chame, Artur Ziviani, Marinez Ferreira de Siqueira
Summary: The unprecedented size of the human population and its economic activities have an increasing impact on global environments, raising concerns about resource consumption and ecosystem capacity. To effectively conserve biodiversity, indicators and knowledge must be openly available to decision-makers in usable ways, requiring tools and techniques to generate trustworthy data from various sources.
WILEY INTERDISCIPLINARY REVIEWS-DATA MINING AND KNOWLEDGE DISCOVERY
(2021)