Non-target sites with single nucleotide insertions or deletions are frequently found in 16S rRNA sequences and can lead to false positives in fluorescence in situ hybridization (FISH)

Extracting nucleic acids from activated sludge which reflect community population diversity

(2009) Simon J. McIlroy et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Candidatus ‘Brocadia fulgida’: an autofluorescent anaerobic ammonium oxidizing bacterium

(2009) Boran Kartal et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogeny andin situidentification of a novel gammaproteobacterium in activated sludge

(2009) Sarah Schroeder et al.   FEMS MICROBIOLOGY LETTERS

Central Role of the Cell in Microbial Ecology

(2009) K. Zengler   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Are some putative glycogen accumulating organisms (GAO) in anaerobic:aerobic activated sludge systems members of the  -Proteobacteria?

(2009) M. Beer et al.   MICROBIOLOGY-SGM

Candidatus Monilibacter spp., common bulking filaments in activated sludge, are members of Cluster III Defluviicoccus

(2009) Tadashi Nittami et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Simple and Safe Method for Simultaneous Isolation of Microbial RNA and DNA from Problematic Populations

(2008) S. McIlroy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of point-mutations on the hybridization affinity of surface-bound DNA/DNA and RNA/DNA oligonucleotide-duplexes: Comparison of single base mismatches and base bulges

(2008) Thomas Naiser et al.   BMC BIOTECHNOLOGY

probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity

(2008) Alexander Loy et al.   ENVIRONMENTAL MICROBIOLOGY

Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization

(2008) L. Safak Yilmaz et al.   ENVIRONMENTAL MICROBIOLOGY

FACS enrichment and identification of floc-associated alphaproteobacterial tetrad-forming organisms in an activated sludge community

(2008) Simon McIlroy et al.   FEMS MICROBIOLOGY LETTERS

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

(2008) Rudolf Amann et al.   NATURE REVIEWS MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH