Transcriptomic response during phage infection of a marine cyanobacterium under phosphorus-limited conditions

Comparative transcriptomics of two environmentally relevant cyanobacteria reveals unexpected transcriptome diversity

(2014) Karsten Voigt et al.   ISME Journal

The elemental composition of virus particles: implications for marine biogeochemical cycles

(2014) Luis F. Jover et al.   NATURE REVIEWS MICROBIOLOGY

Shedding new light on viral photosynthesis

(2014) Richard J. Puxty et al.   PHOTOSYNTHESIS RESEARCH

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses

(2014) E. G. Sakowski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

(2013) Bhakti Dwivedi et al.   BMC EVOLUTIONARY BIOLOGY

Effects of phosphorus starvation versus limitation on the marine cyanobacteriumProchlorococcus MED4 II: gene expression

(2013) Emily Nahas Reistetter et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of phosphorus starvation versus limitation on the marine cyanobacteriumProchlorococcus MED4 I: uptake physiology

(2013) Kristen M. Krumhardt et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent

(2013) Libusha Kelly et al.   ISME Journal

Marine Viruses Exploit Their Host's Two-Component Regulatory System in Response to Resource Limitation

(2012) Qinglu Zeng et al.   CURRENT BIOLOGY

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions

(2012) Gregor Gierga et al.   ISME Journal

Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle

(2012) Jacob R. Waldbauer et al.   PLoS One

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

(2012) Georgia Giannoukos et al.   GENOME BIOLOGY

Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges

(2011) Sijun Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Marine cyanophages: tinkering with the electron transport chain

(2011) Alon Philosof et al.   ISME Journal

Comparative metagenomics of microbial traits within oceanic viral communities

(2011) Itai Sharon et al.   ISME Journal

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

(2011) Hana Yi et al.   NUCLEIC ACIDS RESEARCH

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

(2011) L. R. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Radical mechanism of cyanophage phycoerythrobilin synthase (PebS)

(2010) Andrea W. U. Busch et al.   BIOCHEMICAL JOURNAL

Global regulation by the seven-component Pi signaling system

(2010) Yi-Ju Hsieh et al.   CURRENT OPINION IN MICROBIOLOGY

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

(2010) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

Ecosystem-specific selection pressures revealed through comparative population genomics

(2010) M. L. Coleman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology

(2010) Martha RJ Clokie et al.   Virology Journal

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence ofSynechococcushost genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution

(2009) Andrew D. Millard et al.   ENVIRONMENTAL MICROBIOLOGY

Occurrence of phosphate acquisition genes inProchlorococcuscells from different ocean regions

(2009) Adam C. Martiny et al.   ENVIRONMENTAL MICROBIOLOGY

Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102

(2009) Sasha G Tetu et al.   ISME Journal

Phytoplankton in the ocean use non-phosphorus lipids in response to phosphorus scarcity

(2009) Benjamin A. S. Van Mooy et al.   NATURE

Photosystem I gene cassettes are present in marine virus genomes

(2009) Itai Sharon et al.   NATURE

Efficient Phage-Mediated Pigment Biosynthesis in Oceanic Cyanobacteria

(2008) Thorben Dammeyer et al.   CURRENT BIOLOGY

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

(2008) Shannon J. Williamson et al.   PLoS One

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE