Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics
出版年份 2017 全文链接
标题
Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 8, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2017-04-07
DOI
10.3389/fmicb.2017.00559
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Control of Multidrug-Resistant Gene Flow in the Environment Through Bacteriophage Intervention
- (2016) Krupa M. Parmar et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection
- (2016) Jeroen De Smet et al. ISME Journal
- Identification of Diverse Mycoviruses through Metatranscriptomics Characterization of the Viromes of Five Major Fungal Plant Pathogens
- (2016) Shin-Yi Lee Marzano et al. JOURNAL OF VIROLOGY
- Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol
- (2016) Sergey Malitsky et al. NEW PHYTOLOGIST
- Illuminating structural proteins in viral “dark matter” with metaproteomics
- (2016) Jennifer R. Brum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean
- (2016) Shilo Rosenwasser et al. TRENDS IN MICROBIOLOGY
- RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica
- (2016) Katarzyna Leskinen et al. Viruses-Basel
- Global Transcriptomic Analysis of Interactions between Pseudomonas aeruginosa and Bacteriophage PaP3
- (2016) Xia Zhao et al. Scientific Reports
- The interactome of Streptococcus pneumoniae and its bacteriophages show highly specific patterns of interactions among bacteria and their phages
- (2016) Rachelle Mariano et al. Scientific Reports
- Hyperexpansion of RNA Bacteriophage Diversity
- (2016) Siddharth R. Krishnamurthy et al. PLOS BIOLOGY
- Proteomic Analysis of a Novel Bacillus Jumbo Phage Revealing Glycoside Hydrolase As Structural Component
- (2016) Yihui Yuan et al. Frontiers in Microbiology
- Analysis of Immunological, Viral, Genetic, and Environmental Factors That Might Be Associated with Decreased Susceptibility to HIV Infection in Serodiscordant Couples in Florianópolis, Southern Brazil
- (2015) Íris M. Santos et al. AIDS RESEARCH AND HUMAN RETROVIRUSES
- Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli
- (2015) Marta Veses-Garcia et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mass spectrometry-based metabolomics: applications to biomarker and metabolic pathway research
- (2015) Aihua Zhang et al. BIOMEDICAL CHROMATOGRAPHY
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
- (2015) Rachid Ounit et al. BMC GENOMICS
- Ecological and genetic interactions between cyanobacteria and viruses in a low-oxygen mat community inferred through metagenomics and metatranscriptomics
- (2015) Alexander A. Voorhies et al. ENVIRONMENTAL MICROBIOLOGY
- Transcriptomic response during phage infection of a marine cyanobacterium under phosphorus-limited conditions
- (2015) Xingqin Lin et al. ENVIRONMENTAL MICROBIOLOGY
- Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
- (2015) Jessica M Labonté et al. ISME Journal
- Patterns and ecological drivers of ocean viral communities
- (2015) J. R. Brum et al. SCIENCE
- Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
- (2015) Alexander L. Greninger et al. Genome Medicine
- Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
- (2015) Savannah E. Sanchez et al. Jove-Journal of Visualized Experiments
- Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome
- (2015) Shirley Bikel et al. Computational and Structural Biotechnology Journal
- Genomic, Proteomic, Morphological, and Phylogenetic Analyses of vB_EcoP_SU10, a Podoviridae Phage with C3 Morphology
- (2015) Mohammadali Khan Mirzaei et al. PLoS One
- Transcriptomic Characterization of an Infection of Mycobacterium smegmatis by the Cluster A4 Mycobacteriophage Kampy
- (2015) Andrew Halleran et al. PLoS One
- Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome
- (2014) Bonnie L Hurwitz et al. ISME Journal
- Systematic Identification of Hypothetical Bacteriophage Proteins Targeting Key Protein Complexes of Pseudomonas aeruginosa
- (2014) An Van den Bossche et al. JOURNAL OF PROTEOME RESEARCH
- A first look at the Oxford Nanopore MinION sequencer
- (2014) Alexander S. Mikheyev et al. Molecular Ecology Resources
- Recent advances in genomic DNA sequencing of microbial species from single cells
- (2014) Roger S. Lasken et al. NATURE REVIEWS GENETICS
- Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses
- (2014) B. L. Hurwitz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Relating the metatranscriptome and metagenome of the human gut
- (2014) E. A. Franzosa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Unveiling viral–host interactions within the ‘microbial dark matter’
- (2014) Manuel Martínez-García et al. Nature Communications
- Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
- (2014) Noushin Ghaffari et al. Scientific Reports
- Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
- (2014) Joshua N. Burton et al. G3-Genes Genomes Genetics
- Simple and Cost-Effective Restriction Endonuclease Analysis of Human Adenoviruses
- (2014) Arun Kumar Adhikary et al. Biomed Research International
- Interaction Analysis through Proteomic Phage Display
- (2014) Gustav N. Sundell et al. Biomed Research International
- Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
- (2014) Simon Roux et al. eLife
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
- (2014) Christopher W. Beitel et al. PeerJ
- Integrated Analysis of Transcriptomic and Proteomic Data
- (2013) Saad Haider et al. CURRENT GENOMICS
- Learning from Bacteriophages - Advantages and Limitations of Phage and Phage-Encoded Protein Applications
- (2013) Zuzanna Drulis-Kawa et al. CURRENT PROTEIN & PEPTIDE SCIENCE
- Novel molecular determinants of viral susceptibility and resistance in the lipidome ofEmiliania huxleyi
- (2013) James M. Fulton et al. ENVIRONMENTAL MICROBIOLOGY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- The promise of single-cell sequencing
- (2013) James Eberwine et al. NATURE METHODS
- The microglial sensome revealed by direct RNA sequencing
- (2013) Suzanne E Hickman et al. NATURE NEUROSCIENCE
- Twelve previously unknown phage genera are ubiquitous in global oceans
- (2013) K. Holmfeldt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5
- (2013) Andrew M Kropinski et al. Virology Journal
- Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
- (2013) Simon Roux et al. Nature Communications
- Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
- (2013) S. Roux et al. Open Biology
- Expanding the Marine Virosphere Using Metagenomics
- (2013) Carolina Megumi Mizuno et al. PLoS Genetics
- Metabolic reprogramming by viruses in the sunlit and dark ocean
- (2013) Bonnie L Hurwitz et al. GENOME BIOLOGY
- Interactome Mapping: Using Protein Microarray Technology to Reconstruct Diverse Protein Networks
- (2013) Ijeoma Uzoma et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- A View from Above: Cloud Plots to Visualize Global Metabolomic Data
- (2012) Gary J. Patti et al. ANALYTICAL CHEMISTRY
- Culture-Independent Approaches for Studying Viruses from Hypersaline Environments
- (2012) Fernando Santos et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Transcriptome analysis using next-generation sequencing
- (2012) Kai-Oliver Mutz et al. CURRENT OPINION IN BIOTECHNOLOGY
- Flow cytometry: retrospective, fundamentals and recent instrumentation
- (2012) Julien Picot et al. CYTOTECHNOLOGY
- Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
- (2012) Melissa B. Duhaime et al. ENVIRONMENTAL MICROBIOLOGY
- Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
- (2012) Yan Wei Lim et al. Journal of Cystic Fibrosis
- Protein expression profiles of human lymph and plasma mapped by 2D-DIGE and 1D SDS–PAGE coupled with nanoLC–ESI–MS/MS bottom-up proteomics
- (2012) Cristina C. Clement et al. Journal of Proteomics
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
- PIPS: Pathogenicity Island Prediction Software
- (2012) Siomar C. Soares et al. PLoS One
- Genomic, Proteomic and Physiological Characterization of a T5-like Bacteriophage for Control of Shiga Toxin-Producing Escherichia coli O157:H7
- (2012) Yan D. Niu et al. PLoS One
- Host-virus dynamics and subcellular controls of cell fate in a natural coccolithophore population
- (2012) A. Vardi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The genome and proteome of a Campylobacter coli bacteriophage vB_CcoM-IBB_35 reveal unusual features
- (2012) Carla M Carvalho et al. Virology Journal
- Metabolomic Characterization of Human Rectal Adenocarcinoma with Intact Tissue Magnetic Resonance Spectroscopy
- (2011) Kate W. Jordan et al. DISEASES OF THE COLON & RECTUM
- Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
- (2011) Margret E. Berg Miller et al. ENVIRONMENTAL MICROBIOLOGY
- Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
- (2011) Rika E. Anderson et al. FEMS MICROBIOLOGY ECOLOGY
- The human gut virome: Inter-individual variation and dynamic response to diet
- (2011) S. Minot et al. GENOME RESEARCH
- Metatranscriptomic analysis of extremely halophilic viral communities
- (2011) Fernando Santos et al. ISME Journal
- Mass spectrometry imaging for drugs and metabolites
- (2011) Tyler Greer et al. Journal of Proteomics
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- Single-cell genomics
- (2011) Tomer Kalisky et al. NATURE METHODS
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Single Virus Genomics: A New Tool for Virus Discovery
- (2011) Lisa Zeigler Allen et al. PLoS One
- Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
- (2011) D. Arslan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The iPlant Collaborative: Cyberinfrastructure for Plant Biology
- (2011) Stephen A. Goff et al. Frontiers in Plant Science
- Clostridium perfringens bacteriophages ΦCP39O and ΦCP26F: genomic organization and proteomic analysis of the virions
- (2010) Bruce S. Seal et al. ARCHIVES OF VIROLOGY
- NBC: the Naive Bayes Classification tool webserver for taxonomic classification of metagenomic reads
- (2010) G. L. Rosen et al. BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- (2010) Suzan Yilmaz et al. NATURE METHODS
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
- (2010) Nynke L. van Berkum et al. Jove-Journal of Visualized Experiments
- MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing
- (2009) Arjen Lommen ANALYTICAL CHEMISTRY
- WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
- (2009) Wolfgang Gerlach et al. BMC BIOINFORMATICS
- Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli
- (2009) Rishi Jain et al. BMC Systems Biology
- Virus et prophages dans les écosystèmes aquatiques
- (2009) Télesphore Sime-Ngando et al. CANADIAN JOURNAL OF MICROBIOLOGY
- The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’
- (2009) Matthew B. Sullivan et al. ENVIRONMENTAL MICROBIOLOGY
- Imaging and quantifying virus fluorescence signals on aquatic aggregates: a new method and its implication for aquatic microbial ecology
- (2009) Birgit Luef et al. FEMS MICROBIOLOGY ECOLOGY
- Viruses manipulate the marine environment
- (2009) Forest Rohwer et al. NATURE
- mRNA-Seq whole-transcriptome analysis of a single cell
- (2009) Fuchou Tang et al. NATURE METHODS
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- Whole Genome Amplification and De novo Assembly of Single Bacterial Cells
- (2009) Sébastien Rodrigue et al. PLoS One
- Fast and accurate automatic structure prediction with HHpred
- (2009) Andrea Hildebrand et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Viral Glycosphingolipids Induce Lytic Infection and Cell Death in Marine Phytoplankton
- (2009) A. Vardi et al. SCIENCE
- Functional viral metagenomics and the next generation of molecular tools
- (2009) Thomas Schoenfeld et al. TRENDS IN MICROBIOLOGY
- The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1
- (2009) Andre Villegas et al. Virology Journal
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- MALDI-FTICR Imaging Mass Spectrometry of Drugs and Metabolites in Tissue
- (2008) Dale S. Cornett et al. ANALYTICAL CHEMISTRY
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Functional consequences of viral impacts on bacterial communities: a food-web model analysis
- (2008) TAKESHI MIKI et al. FRESHWATER BIOLOGY
- An examination of the bacteriophages and bacteria of the Namib desert
- (2008) Eric Prestel et al. JOURNAL OF MICROBIOLOGY
- The potential and challenges of nanopore sequencing
- (2008) Daniel Branton et al. NATURE BIOTECHNOLOGY
- Current challenges in metabolomics for diabetes research: a vital functional genomic tool or just a ploy for gaining funding?
- (2008) Julian L. Griffin et al. PHYSIOLOGICAL GENOMICS
- Desorption electrospray ionization mass spectrometry: Imaging drugs and metabolites in tissues
- (2008) J. M. Wiseman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Symbiotic gut microbes modulate human metabolic phenotypes
- (2008) M. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phages across the biosphere: contrasts of viruses in soil and aquatic environments
- (2008) Sharath Srinivasiah et al. RESEARCH IN MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now