The blood DNA virome in 8,000 humans

Zika Virus and the Blood Supply: What Do We Know?

(2017) Alexandra Jimenez et al.   TRANSFUSION MEDICINE REVIEWS

Metagenomics and the Human Virome in Asymptomatic Individuals

(2016) Nicolás Rascovan et al.   Annual Review of Microbiology

Temporal Stability of the Human Skin Microbiome

(2016) Julia Oh et al.   CELL

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

(2016) Cynthia L. Monaco et al.   Cell Host & Microbe

Torquetenovirus: the human virome from bench to bedside

(2016) D. Focosi et al.   CLINICAL MICROBIOLOGY AND INFECTION

Giant viruses come of age

(2016) Matthias G Fischer   CURRENT OPINION IN MICROBIOLOGY

New findings about trichodysplasia spinulosa–associated polyomavirus (TSPyV)—novel qPCR detects TSPyV-DNA in blood samples

(2016) Paulo R. Urbano et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel

(2016) Erin H. Graf et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Viral nucleic acids in human plasma pools

(2016) Wen Zhang et al.   TRANSFUSION

Viral metagenomics and blood safety

(2016) V. Sauvage et al.   TRANSFUSION CLINIQUE ET BIOLOGIQUE

Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

(2016) Angela Glassing et al.   Gut Pathogens

The virome: a missing component of biological interaction networks in health and disease

(2016) Scott A. Handley   Genome Medicine

The Telomeric Repeats of Human Herpesvirus 6A (HHV-6A) Are Required for Efficient Virus Integration

(2016) Nina Wallaschek et al.   PLoS Pathogens

Research on the human virome: where are we and what is next

(2016) Shimian Zou et al.   Microbiome

A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association

(2016) Michael J. Strong et al.   Acta Neuropathologica Communications

Sambamba: fast processing of NGS alignment formats

(2015) Artem Tarasov et al.   BIOINFORMATICS

Enhanced virome sequencing using targeted sequence capture

(2015) Todd N. Wylie et al.   GENOME RESEARCH

Seroprevalence rates of HPyV6, HPyV7, TSPyV, HPyV9, MWPyV and KIPyV polyomaviruses among the healthy blood donors

(2015) Vojtěch Šroller et al.   JOURNAL OF MEDICAL VIROLOGY

Evaluation of convenient pretreatment protocols for RNA virus metagenomics in serum and tissue samples

(2015) Toon Rosseel et al.   JOURNAL OF VIROLOGICAL METHODS

Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent

(2015) Linlin Li et al.   JOURNAL OF VIROLOGICAL METHODS

Comprehensive serological profiling of human populations using a synthetic human virome

(2015) G. J. Xu et al.   SCIENCE

Metagenomic profiling of the viromes of plasma collected from blood donors with elevated serum alanine aminotransferase levels

(2015) Rika A. Furuta et al.   TRANSFUSION

Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses

(2015) Amit Kapoor et al.   mBio

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis

(2015) Thomas Briese et al.   mBio

The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome

(2015) Geoffrey D. Hannigan et al.   mBio

Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa

(2015) Matthew H. Stremlau et al.   PLoS Neglected Tropical Diseases

Archaea in and on the Human Body: Health Implications and Future Directions

(2015) Mor N. Lurie-Weinberger et al.   PLoS Pathogens

Strategies for Achieving High Sequencing Accuracy for Low Diversity Samples and Avoiding Sample Bleeding Using Illumina Platform

(2015) Abhishek Mitra et al.   PLoS One

No Evidence of Marseillevirus-like Virus Presence in Blood Donors and Recipients of Multiple Blood Transfusions

(2014) V. Sauvage et al.   JOURNAL OF INFECTIOUS DISEASES

High-Throughput RNA Sequencing-Based Virome Analysis of 50 Lymphoma Cell Lines from the Cancer Cell Line Encyclopedia Project

(2014) Subing Cao et al.   JOURNAL OF VIROLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

NCBI Viral Genomes Resource

(2014) J. Rodney Brister et al.   NUCLEIC ACIDS RESEARCH

Diverse and Widespread Contamination Evident in the Unmapped Depths of High Throughput Sequencing Data

(2014) Richard W. Lusk   PLoS One

False-Positive Results in Metagenomic Virus Discovery: A Strong Case for Follow-Up Diagnosis

(2014) T. Rosseel et al.   Transboundary and Emerging Diseases

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples

(2014) Michael J. Strong et al.   PLoS Pathogens

The Perils of Pathogen Discovery: Origin of a Novel Parvovirus-Like Hybrid Genome Traced to Nucleic Acid Extraction Spin Columns

(2013) S. N. Naccache et al.   JOURNAL OF VIROLOGY

Evidence of Pervasive Biologically Functional Secondary Structures within the Genomes of Eukaryotic Single-Stranded DNA Viruses

(2013) B. M. Muhire et al.   JOURNAL OF VIROLOGY

Rapid evolution of the human gut virome

(2013) S. Minot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeal Viruses, Not Archaeal Phages: An Archaeological Dig

(2013) Stephen T. Abedon et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Parvovirus transmission by blood products- a cause for concern?

(2012) Päivi Norja et al.   BRITISH JOURNAL OF HAEMATOLOGY

Multiple Sources of Contamination in Samples from Patients Reported to Have XMRV Infection

(2012) Mary F. Kearney et al.   PLoS One

Human Skin Microbiota: High Diversity of DNA Viruses Identified on the Human Skin by High Throughput Sequencing

(2012) Vincent Foulongne et al.   PLoS One

Human parvovirus 4 in the blood supply and transmission by pooled plasma-derived clotting factors: does it matter?

(2012) Eric Delwart   TRANSFUSION

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Merkel cell polyomavirus DNA sequences in the buffy coats of healthy blood donors

(2011) C. Pancaldi et al.   BLOOD

Efficient de novo assembly of large genomes using compressed data structures

(2011) J. T. Simpson et al.   GENOME RESEARCH

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Failure to Confirm XMRV/MLVs in the Blood of Patients with Chronic Fatigue Syndrome: A Multi-Laboratory Study

(2011) G. Simmons et al.   SCIENCE

Elevated 17β-Estradiol Protects Females from Influenza A Virus Pathogenesis by Suppressing Inflammatory Responses

(2011) Dionne P. Robinson et al.   PLoS Pathogens

Characterization of RD-114 Virus Isolated from a Commercial Canine Vaccine Manufactured Using CRFK Cells

(2010) R. Yoshikawa et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Herpesviruses and Chromosomal Integration

(2010) G. Morissette et al.   JOURNAL OF VIROLOGY

Transfusion transmission of highly prevalent commensal human viruses

(2010) Flavien Bernardin et al.   TRANSFUSION

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

Discovery of a New Human Polyomavirus Associated with Trichodysplasia Spinulosa in an Immunocompromized Patient

(2010) Els van der Meijden et al.   PLoS Pathogens

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Redefining Chronic Viral Infection

(2009) Herbert W. Virgin et al.   CELL

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Human papillomavirus DNA detected in peripheral blood samples from healthy Australian male blood donors

(2009) Alice Che-Ha Chen et al.   JOURNAL OF MEDICAL VIROLOGY

Recombination of Retrotransposon and Exogenous RNA Virus Results in Nonretroviral cDNA Integration

(2009) M. B. Geuking et al.   SCIENCE

Quantitation of Human Seroresponsiveness to Merkel Cell Polyomavirus

(2009) Diana V. Pastrana et al.   PLoS Pathogens

Presence of hepatitis C Virus DNA sequences in the DNA of infected patients

(2008) R. Zemer et al.   EUROPEAN JOURNAL OF CLINICAL INVESTIGATION

Herpesvirus prevalence and viral load in healthy blood donors by quantitative real-time polymerase chain reaction

(2008) S. David Hudnall et al.   TRANSFUSION