A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association

Cytomegalovirus Immediate-Early Proteins Promote Stemness Properties in Glioblastoma

(2015) L. Soroceanu et al.   CANCER RESEARCH

Cytomegalovirus infection induces a stem cell phenotype in human primary glioblastoma cells: prognostic significance and biological impact

(2015) O Fornara et al.   CELL DEATH AND DIFFERENTIATION

Latent Expression of the Epstein-Barr Virus (EBV)-Encoded Major Histocompatibility Complex Class I TAP Inhibitor,BNLF2a, in EBV-Positive Gastric Carcinomas

(2015) Michael J. Strong et al.   JOURNAL OF VIROLOGY

CBTRUS Statistical Report: Primary Brain and Central Nervous System Tumors Diagnosed in the United States in 2008-2012

(2015) Quinn T. Ostrom et al.   NEURO-ONCOLOGY

Human cytomegalovirus and primary intracranial tumours: frequency of tumour infection and lack of correlation with systemic immune anti-viral responses

(2015) E. Bianchi et al.   NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas

(2015)   NEW ENGLAND JOURNAL OF MEDICINE

Detection of viral pathogens in high grade gliomas from unmapped next-generation sequencing data

(2014) Patrick J. Cimino et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

Absence of cytomegalovirus in high-coverage DNA sequencing of human glioblastoma multiforme

(2014) Ka-Wei Tang et al.   INTERNATIONAL JOURNAL OF CANCER

Does the existence of HCMV components predict poor prognosis in glioma?

(2014) Daling Ding et al.   JOURNAL OF NEURO-ONCOLOGY

Comprehensive High-Throughput RNA Sequencing Analysis Reveals Contamination of Multiple Nasopharyngeal Carcinoma Cell Lines with HeLa Cell Genomes

(2014) M. J. Strong et al.   JOURNAL OF VIROLOGY

High-Throughput RNA Sequencing-Based Virome Analysis of 50 Lymphoma Cell Lines from the Cancer Cell Line Encyclopedia Project

(2014) Subing Cao et al.   JOURNAL OF VIROLOGY

Comprehensive molecular characterization of gastric adenocarcinoma

(2014) Adam J. Bass et al.   NATURE

CMV infection and glioma, a highly controversial concept struggling in the clinical arena

(2014) W. Wick et al.   NEURO-ONCOLOGY

Human cytomegalovirus infection in tumor cells of the nervous system is not detectable with standardized pathologico-virological diagnostics

(2014) P. Baumgarten et al.   NEURO-ONCOLOGY

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

(2014) Guorong Xu et al.   PLoS One

MRI-localized biopsies reveal subtype-specific differences in molecular and cellular composition at the margins of glioblastoma

(2014) B. J. Gill et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expanding the Conversation on High-Throughput Virome Sequencing Standards To Include Consideration of Microbial Contamination Sources

(2014) Michael J. Strong et al.   mBio

Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples

(2014) Michael J. Strong et al.   PLoS Pathogens

The Somatic Genomic Landscape of Glioblastoma

(2013) Cameron W. Brennan et al.   CELL

Good maths is needed to understand CMV data in glioblastoma

(2013) Wolfgang Wick et al.   INTERNATIONAL JOURNAL OF CANCER

Effects of valganciclovir as an add-on therapy in patients with cytomegalovirus-positive glioblastoma: A randomized, double-blind, hypothesis-generating study

(2013) Giuseppe Stragliotto et al.   INTERNATIONAL JOURNAL OF CANCER

Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response

(2013) Érika Cosset et al.   INTERNATIONAL JOURNAL OF CANCER

Human cytomegalovirus infection levels in glioblastoma multiforme are of prognostic value for survival

(2013) Afsar Rahbar et al.   JOURNAL OF CLINICAL VIROLOGY

High prevalence of HCMV and viral load in tumor tissues and peripheral blood of glioblastoma multiforme patients

(2013) Claudia Januário dos Santos et al.   JOURNAL OF MEDICAL VIROLOGY

Epstein-Barr Virus and Human Herpesvirus 6 Detection in a Non-Hodgkin's Diffuse Large B-Cell Lymphoma Cohort by Using RNA Sequencing

(2013) Michael J. Strong et al.   JOURNAL OF VIROLOGY

Landscape of DNA Virus Associations across Human Malignant Cancers: Analysis of 3,775 Cases Using RNA-Seq

(2013) J. D. Khoury et al.   JOURNAL OF VIROLOGY

Presence of Viral DNA in Whole-Genome Sequencing of Brain Tumor Tissues from The Cancer Genome Atlas

(2013) E. S. Amirian et al.   JOURNAL OF VIROLOGY

Lack of presence of the human cytomegalovirus in human glioblastoma

(2013) Yoriko Yamashita et al.   MODERN PATHOLOGY

Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations

(2013) Priscilla K Brastianos et al.   NATURE GENETICS

Survival in Patients with Glioblastoma Receiving Valganciclovir

(2013) Cecilia Söderberg-Nauclér et al.   NEW ENGLAND JOURNAL OF MEDICINE

The landscape of viral expression and host gene fusion and adaptation in human cancer

(2013) Ka-Wei Tang et al.   Nature Communications

Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy

(2013) Michael J. Strong et al.   PLoS Pathogens

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Detection of Murine Leukemia Virus in the Epstein-Barr Virus-Positive Human B-Cell Line JY, Using a Computational RNA-Seq-Based Exogenous Agent Detection Pipeline, PARSES

(2012) Z. Lin et al.   JOURNAL OF VIROLOGY

Genetic Analysis of Cytomegalovirus in Malignant Gliomas

(2012) B. Bhattacharjee et al.   JOURNAL OF VIROLOGY

The prevalence of human cytomegalovirus DNA in gliomas of Brazilian patients

(2012) Renata Fragelli Fonseca et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Consensus on the role of human cytomegalovirus in glioblastoma

(2012) K. Dziurzynski et al.   NEURO-ONCOLOGY

Decoding Human Cytomegalovirus

(2012) N. Stern-Ginossar et al.   SCIENCE

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

Glioma-Associated Cytomegalovirus Mediates Subversion of the Monocyte Lineage to a Tumor Propagating Phenotype

(2011) K. Dziurzynski et al.   CLINICAL CANCER RESEARCH

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Significant Association of Multiple Human Cytomegalovirus Genomic Loci with Glioblastoma Multiforme Samples

(2011) P. Ranganathan et al.   JOURNAL OF VIROLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

RNASEQR—a streamlined and accurate RNA-seq sequence analysis program

(2011) Leslie Y. Chen et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

(2010) Roel G.W. Verhaak et al.   CANCER CELL

The detection of CMV pp65 and IE1 in glioblastoma multiforme

(2010) Kenneth G. Lucas et al.   JOURNAL OF NEURO-ONCOLOGY

Chronic Viral Infection and Primary Central Nervous System Malignancy

(2010) Robert Saddawi-Konefka et al.   Journal of Neuroimmune Pharmacology

Profile of physical status and gene variation of human papillomavirus 58 genome in cervical cancer

(2009) E.-q. Wu et al.   JOURNAL OF GENERAL VIROLOGY

Detection of human cytomegalovirus in different histological types of gliomas

(2008) Michael E. Scheurer et al.   ACTA NEUROPATHOLOGICA

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

(2008) David A Nix et al.   BMC BIOINFORMATICS

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

Malignant Gliomas in Adults

(2008) Patrick Y. Wen et al.   NEW ENGLAND JOURNAL OF MEDICINE

Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma

(2008) H. Feng et al.   SCIENCE

Sensitive detection of human cytomegalovirus in tumors and peripheral blood of patients diagnosed with glioblastoma

(2007) Duane A. Mitchell et al.   NEURO-ONCOLOGY