NCBI Viral Genomes Resource

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

(2014) Yiming Bao et al.   ARCHIVES OF VIROLOGY

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

(2014) S. N. Naccache et al.   GENOME RESEARCH

A new approach to determining whole viral genomic sequences including termini using a single deep sequencing run

(2014) Kendra J. Alfson et al.   JOURNAL OF VIROLOGICAL METHODS

Molecular Epidemiology of Contemporary G2P[4] Human Rotaviruses Cocirculating in a Single U.S. Community: Footprints of a Globally Transitioning Genotype

(2014) A. F. Dennis et al.   JOURNAL OF VIROLOGY

Deep Sequencing of Norovirus Genomes Defines Evolutionary Patterns in an Urban Tropical Setting

(2014) M. Cotten et al.   JOURNAL OF VIROLOGY

Emergence of Zaire Ebola Virus Disease in Guinea

(2014) Sylvain Baize et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Molecular identification of hepatitis B virus genotypes/subgenotypes: Revised classification hurdles and updated resolutions

(2014) Mahmoud Reza Pourkarim   WORLD JOURNAL OF GASTROENTEROLOGY

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

Virus nomenclature below the species level: a standardized nomenclature for laboratory animal-adapted strains and variants of viruses assigned to the family Filoviridae

(2013) Jens H. Kuhn et al.   ARCHIVES OF VIROLOGY

Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: Updated criteria and genotype assignment web resource

(2013) Donald B. Smith et al.   HEPATOLOGY

Transmission and evolution of the Middle East respiratory syndrome coronavirus in Saudi Arabia: a descriptive genomic study

(2013) Matthew Cotten et al.   LANCET

Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation

(2013) Bart L Haagmans et al.   LANCET INFECTIOUS DISEASES

Database resources of the National Center for Biotechnology Information

(2013)   NUCLEIC ACIDS RESEARCH

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2013) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

The European Bioinformatics Institute’s data resources 2014

(2013) Catherine Brooksbank et al.   NUCLEIC ACIDS RESEARCH

Virus Variation Resource—recent updates and future directions

(2013) J. Rodney Brister et al.   NUCLEIC ACIDS RESEARCH

DDBJ progress report: a new submission system for leading to a correct annotation

(2013) Takehide Kosuge et al.   NUCLEIC ACIDS RESEARCH

VirusFinder: Software for Efficient and Accurate Detection of Viruses and Their Integration Sites in Host Genomes through Next Generation Sequencing Data

(2013) Qingguo Wang et al.   PLoS One

Evaluation of Alignment Algorithms for Discovery and Identification of Pathogens Using RNA-Seq

(2013) Ivan Borozan et al.   PLoS One

Virus nomenclature below the species level: a standardized nomenclature for natural variants of viruses assigned to the family Filoviridae

(2012) Jens H. Kuhn et al.   ARCHIVES OF VIROLOGY

Evolution of Viral Proteins Originated De Novo by Overprinting

(2012) Niv Sabath et al.   MOLECULAR BIOLOGY AND EVOLUTION

Going viral: next-generation sequencing applied to phage populations in the human gut

(2012) Alejandro Reyes et al.   NATURE REVIEWS MICROBIOLOGY

ViralZone: recent updates to the virus knowledge resource

(2012) Patrick Masson et al.   NUCLEIC ACIDS RESEARCH

VIGOR extended to annotate genomes for additional 12 different viruses

(2012) S. Wang et al.   NUCLEIC ACIDS RESEARCH

Microbial virus genome annotation—Mustering the troops to fight the sequence onslaught

(2012) J. Rodney Brister et al.   VIROLOGY

PAirwise Sequence Comparison (PASC) and Its Application in the Classification of Filoviruses

(2012) Yiming Bao et al.   Viruses-Basel

Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)

(2011) Jelle Matthijnssens et al.   ARCHIVES OF VIROLOGY

PathSeq: software to identify or discover microbes by deep sequencing of human tissue

(2011) Aleksandar D Kostic et al.   NATURE BIOTECHNOLOGY

ViPR: an open bioinformatics database and analysis resource for virology research

(2011) Brett E. Pickett et al.   NUCLEIC ACIDS RESEARCH

The International Nucleotide Sequence Database Collaboration

(2011) I. Karsch-Mizrachi et al.   NUCLEIC ACIDS RESEARCH

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

VIGOR, an annotation program for small viral genomes

(2010) Shiliang Wang et al.   BMC BIOINFORMATICS

Herpesvirus systematics

(2010) Andrew J. Davison   VETERINARY MICROBIOLOGY

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

(2010) James Rodney Brister et al.   Viruses-Basel

Virus variation resources at the National Center for Biotechnology Information: dengue virus

(2009) Wolfgang Resch et al.   BMC MICROBIOLOGY

Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation

(2009) C. Rancurel et al.   JOURNAL OF VIROLOGY

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread

(2009) Lori R Holtz et al.   Virology Journal

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

The National Center for Biotechnology Information's Protein Clusters Database

(2008) William Klimke et al.   NUCLEIC ACIDS RESEARCH

Human immunodeficiency virus type 1, human protein interaction database at NCBI

(2008) W. Fu et al.   NUCLEIC ACIDS RESEARCH