A high resolution atlas of gene expression in the domestic sheep (Ovis aries)

A golden goat genome

(2017) Kim C Worley   NATURE GENETICS

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

(2017) Derek M Bickhart et al.   NATURE GENETICS

SCIMP is a transmembrane non-TIR TLR adaptor that promotes proinflammatory cytokine production from macrophages

(2017) Lin Luo et al.   Nature Communications

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

(2017) J. Kenneth Baillie et al.   PLoS Genetics

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

(2016) Christopher K. Tuggle et al.   ANIMAL GENETICS

Sexually Dimorphic Gene Expression in Bovine Conceptuses at the Initiation of Implantation

(2016) N. Forde et al.   BIOLOGY OF REPRODUCTION

Fibromodulin: A regulatory molecule maintaining cellular architecture for normal cellular function

(2016) Arif Tasleem Jan et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Role of the JP45-Calsequestrin Complex on Calcium Entry in Slow Twitch Skeletal Muscles

(2016) Barbara Mosca et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Differential Expression of Inflammatory Cytokines and Stress Genes in Male and Female Mice in Response to a Lipopolysaccharide Challenge

(2016) Ashleigh Everhardt Queen et al.   PLoS One

Climate change: Production performance, health issues, greenhouse gas emissions and mitigation strategies in sheep and goat farming

(2016) R. Marino et al.   SMALL RUMINANT RESEARCH

Live weight, conformation, carcass traits and economic values of ram lambs of Red Maasai and Dorper sheep and their crosses

(2016) E. Zonabend König et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues

(2016) Ruidong Xiang et al.   PeerJ

Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome

(2016) Aroa Suárez-Vega et al.   Scientific Data

Comparative transcriptome profiling of longissimus muscle tissues from Qianhua Mutton Merino and Small Tail Han sheep

(2016) Limin Sun et al.   Scientific Reports

Gene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production

(2016) Ruidong Xiang et al.   Scientific Reports

Mitochondrial pyruvate transport: a historical perspective and future research directions

(2015) Kyle S. McCommis et al.   BIOCHEMICAL JOURNAL

Cell Type-Specific Sexual Dimorphism in Rat Pituitary Gene Expression During Maturation1

(2015) Ivana Bjelobaba et al.   BIOLOGY OF REPRODUCTION

Binary Switching of Calendar Cells in the Pituitary Defines the Phase of the Circannual Cycle in Mammals

(2015) Shona H. Wood et al.   CURRENT BIOLOGY

Genome-wide analysis reveals the differential regulations of mRNAs and miRNAs in Dorset and Small Tail Han sheep muscles

(2015) Xiangyang Miao et al.   GENE

A polymorphism in a phosphotyrosine signalling motif of CD229 (Ly9, SLAMF3) alters SH2 domain binding and T-cell activation

(2015) Stefanie Margraf et al.   IMMUNOLOGY

Searching for causal networks involving latent variables in complex traits: Application to growth, carcass, and meat quality traits in pigs1

(2015) F. Peñagaricano et al.   JOURNAL OF ANIMAL SCIENCE

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

BioGPS: building your own mash-up of gene annotations and expression profiles

(2015) Chunlei Wu et al.   NUCLEIC ACIDS RESEARCH

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

(2015) Sarah E. Calvo et al.   NUCLEIC ACIDS RESEARCH

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium

(2015) Nancy Yiu-Lin Yu et al.   NUCLEIC ACIDS RESEARCH

The human transcriptome across tissues and individuals

(2015) M. Mele et al.   SCIENCE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

(2015) Dmitri D. Pervouchine et al.   Nature Communications

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

(2015) Leif Andersson et al.   GENOME BIOLOGY

Gateways to the FANTOM5 promoter level mammalian expression atlas

(2015) Marina Lizio et al.   GENOME BIOLOGY

Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs

(2015) Caroline M. Junker Mentzel et al.   PLoS One

Intracellular MMP-2 Activity in Skeletal Muscle Is Associated With Type II Fibers

(2014) Elin Hadler-Olsen et al.   JOURNAL OF CELLULAR PHYSIOLOGY

IL-36 Promotes Myeloid Cell Infiltration, Activation, and Inflammatory Activity in Skin

(2014) A. M. Foster et al.   JOURNAL OF IMMUNOLOGY

RNA-Sequencing: A tool to explore new frontiers in animal genetics

(2014) Saumya Wickramasinghe et al.   Livestock Science

An atlas of active enhancers across human cell types and tissues

(2014) Robin Andersson et al.   NATURE

A promoter-level mammalian expression atlas

(2014)   NATURE

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU

(2014) Jessica Severin et al.   NATURE BIOTECHNOLOGY

The sheep genome illuminates biology of the rumen and lipid metabolism

(2014) Y. Jiang et al.   SCIENCE

Dentin Sialophosphoprotein: A Regulatory Protein for Dental Pulp Stem Cell Identity and Fate

(2014) Shiliang Guo et al.   STEM CELLS AND DEVELOPMENT

Breed, sex and anatomical location-specific gene expression profiling of the porcine skeletal muscles

(2013) Jie Zhang et al.   BMC GENETICS

RNA-seq analysis of single bovine blastocysts

(2013) James L Chitwood et al.   BMC GENOMICS

Coexpression analysis of large cancer datasets provides insight into the cellular phenotypes of the tumour microenvironment

(2013) Tamasin N Doig et al.   BMC GENOMICS

Comparative Analysis of Monocyte Subsets in the Pig

(2013) L. Fairbairn et al.   JOURNAL OF IMMUNOLOGY

Control of fresh meat quality through manipulation of muscle fiber characteristics

(2013) S.T. Joo et al.   MEAT SCIENCE

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Reviewing and Updating the Major Molecular Markers for Stem Cells

(2013) Raquel Calloni et al.   STEM CELLS AND DEVELOPMENT

Myostatin facilitates slow and inhibits fast myosin heavy chain expression during myogenic differentiation

(2012) Min Wang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

RNA-Seq Atlas—a reference database for gene expression profiling in normal tissue by next-generation sequencing

(2012) Markus Krupp et al.   BIOINFORMATICS

A gene expression atlas of the domestic pig

(2012) Tom C Freeman et al.   BMC BIOLOGY

Pig Bone Marrow-Derived Macrophages Resemble Human Macrophages in Their Response to Bacterial Lipopolysaccharide

(2012) R. Kapetanovic et al.   JOURNAL OF IMMUNOLOGY

BioGPS and MyGene.info: organizing online, gene-centric information

(2012) Chunlei Wu et al.   NUCLEIC ACIDS RESEARCH

Cochlin, Intraocular Pressure Regulation and Mechanosensing

(2012) Manik Goel et al.   PLoS One

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

(2012) Ben J. Hayes et al.   TRENDS IN GENETICS

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation

(2012) Gregory P Harhay et al.   GENOME BIOLOGY

Genes Contributing to Genetic Variation of Muscling in Sheep

(2012) Ross L. Tellam et al.   Frontiers in Genetics

Evidence for NHE3-mediated Na transport in sheep and bovine forestomach

(2011) Imtiaz Rabbani et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Intestinal macrophages - specialised adaptation to a unique environment

(2011) Calum C. Bain et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Expression of mesenchyme-specific gene signatures by follicular dendritic cells: insights from the meta-analysis of microarray data from multiple mouse cell populations

(2011) Neil A. Mabbott et al.   IMMUNOLOGY

Do cilia put brakes on the cell cycle?

(2011) Peter K. Jackson   NATURE CELL BIOLOGY

TOPAZ1, a Novel Germ Cell-Specific Expressed Gene Conserved during Evolution across Vertebrates

(2011) Adrienne Baillet et al.   PLoS One

Adhesion Protein VSIG1 Is Required for the Proper Differentiation of Glandular Gastric Epithelia

(2011) Odgerel Oidovsambuu et al.   PLoS One

Posttranscriptional mechanisms involving microRNA-27a and b contribute to fast-specific and glucocorticoid-mediated myostatin expression in skeletal muscle

(2010) David L. Allen et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Functional annotation of heart enriched mitochondrial genes GBAS and CHCHD10 through guilt by association

(2010) Ruben S.R.M. Martherus et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Meta-analysis of lineage-specific gene expression signatures in mouse leukocyte populations

(2010) Neil A. Mabbott et al.   IMMUNOBIOLOGY

Sex determines the expression level of one third of the actively expressed genes in bovine blastocysts

(2010) P. Bermejo-Alvarez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accuracy of estimated genomic breeding values for wool and meat traits in a multi-breed sheep population

(2010) H. D. Daetwyler et al.   Animal Production Science

Network visualization and analysis of gene expression data using BioLayout Express3D

(2009) Athanasios Theocharidis et al.   Nature Protocols

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

A Role for Lengsin, a Recruited Enzyme, in Terminal Differentiation in the Vertebrate Lens

(2008) Keith Wyatt et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Opalin, a Transmembrane Sialylglycoprotein Located in the Central Nervous System Myelin Paranodal Loop Membrane

(2008) Fumio Yoshikawa et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expression of the fast twitch troponin complex, fTnT, fTnI and fTnC, in vascular smooth muscle

(2008) Carlos M. Moran et al.   CELL MOTILITY AND THE CYTOSKELETON

Altered carnitine homeostasis is associated with decreased mitochondrial function and altered nitric oxide signaling in lambs with pulmonary hypertension

(2007) Shruti Sharma et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

The transcriptional regulation of the Colony-Stimulating Factor 1 Receptor (csf1r) gene during hematopoiesis

(2007) Constanze Bonifer   Frontiers in Bioscience-Landmark