The sheep genome illuminates biology of the rumen and lipid metabolism

Liver Fatty Acid-binding Protein Binds Monoacylglycerolin Vitroand in Mouse Liver Cytosol

(2013) William S. Lagakos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Exploring Differentially Expressed Genes by RNA-Seq in Cashmere Goat (Capra hircus) Skin during Hair Follicle Development and Cycling

(2013) Rongqing Geng et al.   PLoS One

Identifying host pathogenic pathways in bovine digital dermatitis by RNA-Seq analysis

(2013) R.A. Scholey et al.   VETERINARY JOURNAL

Draft genome sequence of the Tibetan antelope

(2013) Ri-Li Ge et al.   Nature Communications

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Population Genetic Inference from Personal Genome Data: Impact of Ancestry and Admixture on Human Genomic Variation

(2012) Jeffrey M. Kidd et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast and robust multiple sequence alignment with phylogeny-aware gap placement

(2012) Adam M Szalkowski   BMC BIOINFORMATICS

High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly

(2012) Bertrand Servin et al.   BMC GENOMICS

Genome Analysis of the Domestic Dog (Korean Jindo) by Massively Parallel Sequencing

(2012) R. N. Kim et al.   DNA RESEARCH

The human epidermal differentiation complex: cornified envelope precursors, S100 proteins and the ‘fused genes’ family

(2012) Magdalini Kypriotou et al.   EXPERIMENTAL DERMATOLOGY

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

(2012) J. E. Collins et al.   GENOME RESEARCH

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Evidence for regulated monoacylglycerol acyltransferase expression and activity in human liver

(2012) Angela M. Hall et al.   JOURNAL OF LIPID RESEARCH

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

The yak genome and adaptation to life at high altitude

(2012) Qiang Qiu et al.   NATURE GENETICS

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Summarizing and correcting the GC content bias in high-throughput sequencing

(2012) Yuval Benjamini et al.   NUCLEIC ACIDS RESEARCH

Design and phenotyping procedures for recording wool, skin, parasite resistance, growth, carcass yield and quality traits of the SheepGENOMICS mapping flock

(2012) Jason D. White et al.   Animal Production Science

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Evolution of Grasses and Grassland Ecosystems

(2011) Caroline A.E. Strömberg   Annual Review of Earth and Planetary Sciences

LPA-producing enzyme PA-PLA1α regulates hair follicle development by modulating EGFR signalling

(2011) Asuka Inoue et al.   EMBO JOURNAL

GAGE: A critical evaluation of genome assemblies and assembly algorithms

(2011) S. L. Salzberg et al.   GENOME RESEARCH

Expression of endogenous retrovirus-like transcripts in bovine trophoblastic cells

(2011) K. Koshi et al.   PLACENTA

The sheep genome reference sequence: a work in progress

(2010) et al.   ANIMAL GENETICS

Statistical confidence measures for genome maps: application to the validation of genome assemblies

(2010) Bertrand Servin et al.   BIOINFORMATICS

A complete DNA sequence map of the ovine Major Histocompatibility Complex

(2010) Jianfeng Gao et al.   BMC GENOMICS

Statistical inference of allelic imbalance from transcriptome data

(2010) Michael Nothnagel et al.   HUMAN MUTATION

Invited review: Ruminant ecology and evolution: Perspectives useful to ruminant livestock research and production

(2010) T.J. Hackmann et al.   JOURNAL OF DAIRY SCIENCE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science

(2010) E. J. Edwards et al.   SCIENCE

A radiation hybrid comparative map of ovine chromosome 1 aligned to the virtual sheep genome

(2009) C. H. Wu et al.   ANIMAL GENETICS

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Analysis of recent segmental duplications in the bovine genome

(2009) George E Liu et al.   BMC GENOMICS

Characterization of the bovine pregnancy-associated glycoprotein gene family – analysis of gene sequences, regulatory regions within the promoter and expression of selected genes

(2009) Bhanu Telugu et al.   BMC GENOMICS

Cytogenetic anchoring of radiation hybrid and virtual maps of sheep chromosome X and comparison of X chromosomes in sheep, cattle, and human

(2009) Tom Goldammer et al.   CHROMOSOME RESEARCH

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

(2009) James W. Kijas et al.   PLoS One

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes

(2008) A.-S. Van Laere et al.   GENOME RESEARCH

genBlastA: Enabling BLAST to identify homologous gene sequences

(2008) R. She et al.   GENOME RESEARCH

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

(2008) B. J. Norris et al.   GENOME RESEARCH

Origin, Evolution, and Biological Role of miRNA Cluster in DLK-DIO3 Genomic Region in Placental Mammals

(2008) E. A. Glazov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE