A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input–mutation output relationships

Specificity of genome evolution in experimental populations ofEscherichia colievolved at different temperatures

(2017) Daniel E. Deatherage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra

(2017) Sonal Shewaramani et al.   PLoS Genetics

Insights into an evolutionary strategy leading to antibiotic resistance

(2017) Chun-Feng D. Hou et al.   Scientific Reports

The Effect of Local Sequence Context on Mutational Bias of Genes Encoded on the Leading and Lagging Strands

(2016) Jeremy W. Schroeder et al.   CURRENT BIOLOGY

Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencing

(2016) Justin Jee et al.   NATURE

Antibiotic treatment enhances the genome-wide mutation rate of target cells

(2016) Hongan Long et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ppGpp couples transcription to DNA repair in E. coli

(2016) V. Kamarthapu et al.   SCIENCE

Trade-off Mechanisms Shaping the Diversity of Bacteria

(2016) Thomas Ferenci   TRENDS IN MICROBIOLOGY

On the Causes of Evolutionary Transition:Transversion Bias

(2015) Arlin Stoltzfus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determinants of spontaneous mutation in the bacteriumEscherichia colias revealed by whole-genome sequencing

(2015) Patricia L. Foster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation—The Engine of Evolution: Studying Mutation and Its Role in the Evolution of Bacteria: Figure 1.

(2015) Ruth Hershberg   Cold Spring Harbor Perspectives in Biology

Mutational heterogeneity: A key ingredient of bet-hedging and evolutionary divergence?

(2014) Thomas Ferenci et al.   BIOESSAYS

Mutational signatures: the patterns of somatic mutations hidden in cancer genomes

(2014) Ludmil B Alexandrov et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Stress-Induced Mutation Rates Show a Sigmoidal and Saturable Increase Due to the RpoS Sigma Factor in Escherichia coli

(2014) R. Maharjan et al.   GENETICS

Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations

(2014) Caifu Jiang et al.   GENOME RESEARCH

Comprehensive phenotypic characterization of rifampicin resistance mutations in Salmonella provides insight into the evolution of resistance in Mycobacterium tuberculosis

(2014) Gerrit Brandis et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Massive Diversification in Aging Colonies of Escherichia coli

(2014) C. Saint-Ruf et al.   JOURNAL OF BACTERIOLOGY

Mendelian-Mutationism: The Forgotten Evolutionary Synthesis

(2014) Arlin Stoltzfus et al.   JOURNAL OF THE HISTORY OF BIOLOGY

Mutational Signatures Indicative of Environmental Stress in Bacteria

(2014) Ram Maharjan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

(2014) Rasmus Lykke Marvig et al.   NATURE GENETICS

The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps

(2014) João Barroso-Batista et al.   PLoS Genetics

Rates of transposition in Escherichia coli

(2013) A. Sousa et al.   Biology Letters

Processes and patterns of oceanic nutrient limitation

(2013) C. M. Moore et al.   Nature Geoscience

Evaluating evolutionary models of stress-induced mutagenesis in bacteria

(2013) R. Craig MacLean et al.   NATURE REVIEWS GENETICS

Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

(2013) Charles J. Dorman   NATURE REVIEWS MICROBIOLOGY

β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

(2013) A. Gutierrez et al.   Nature Communications

Elevated Mutagenesis Does Not Explain the Increased Frequency of Antibiotic Resistant Mutants in Starved Aging Colonies

(2013) Sophia Katz et al.   PLoS Genetics

Antimicrobials as promoters of genetic variation

(2012) Jesús Blázquez et al.   CURRENT OPINION IN MICROBIOLOGY

The identification of global patterns and unique signatures of proteins across 14 environments using outer membrane proteomics of bacteria

(2012) Martin Schliep et al.   Molecular BioSystems

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

(2012) S. Wielgoss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identity and Function of a Large Gene Network Underlying Mutagenic Repair of DNA Breaks

(2012) A. A. M. Al Mamun et al.   SCIENCE

The multiplicity of divergence mechanisms in a single evolving population

(2012) Ram P Maharjan et al.   GENOME BIOLOGY

Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli

(2011) C. Shee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergence Involving Global Regulatory Gene Mutations in an Escherichia coli Population Evolving under Phosphate Limitation

(2010) Lei Wang et al.   Genome Biology and Evolution

RpoS, the Stress Response Sigma Factor, Plays a Dual Role in the Regulation of Escherichia coli's Error-Prone DNA Polymerase IV

(2010) K. A. M. Storvik et al.   JOURNAL OF BACTERIOLOGY

The σE stress response is required for stress-induced mutation and amplification in Escherichia coli

(2010) Janet L. Gibson et al.   MOLECULAR MICROBIOLOGY

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Fluctuation AnaLysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis

(2009) B. M. Hall et al.   BIOINFORMATICS

Genomic Sequencing Reveals Regulatory Mutations and Recombinational Events in the Widely Used MC4100 Lineage of Escherichia coli K-12

(2009) T. Ferenci et al.   JOURNAL OF BACTERIOLOGY

Phosphate Depletion: A Novel Trigger forMycobacterium tuberculosisPersistence

(2009) Dalin Rifat et al.   JOURNAL OF INFECTIOUS DISEASES

Variation in the Ratio of Nucleotide Substitution and Indel Rates across Genomes in Mammals and Bacteria

(2009) J.-Q. Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Good mutations available in all sizes

(2009) Patrick Goymer   NATURE REVIEWS MICROBIOLOGY

Accumulation of mutants in "aging" bacterial colonies is due to growth under selection, not stress-induced mutagenesis

(2008) M. Wrande et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA