The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps

Synchronous Waves of Failed Soft Sweeps in the Laboratory: Remarkably Rampant Clonal Interference of Alleles at a Single Locus

(2013) M.-C. Lee et al.   GENETICS

An ABC Method for Estimating the Rate and Distribution of Effects of Beneficial Mutations

(2013) Jorge A. Moura de Sousa et al.   Genome Biology and Evolution

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Parallel Evolutionary Dynamics of Adaptive Diversification in Escherichia coli

(2013) Matthew D. Herron et al.   PLOS BIOLOGY

Bacterial Adaptation through Loss of Function

(2013) Alison K. Hottes et al.   PLoS Genetics

A method to infer positive selection from marker dynamics in an asexual population

(2012) Christopher J. R. Illingworth et al.   BIOINFORMATICS

Mutation accumulation and fitness in mutator subpopulations of Escherichia coli

(2012) R. P. Maharjan et al.   Biology Letters

Clonal Interference in the Evolution of Influenza

(2012) N. Strelkowa et al.   GENETICS

The Streptomycin-Treated Mouse Intestine SelectsEscherichia coli envZMissense Mutants That Interact with Dense and Diverse Intestinal Microbiota

(2012) Mary P. Leatham-Jensen et al.   INFECTION AND IMMUNITY

Fitness Effects of Mutations in Bacteria

(2012) Isabel Gordo et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Chance and risk in adaptive evolution

(2012) M. Lassig   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

(2012) B. H. Good et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The multiplicity of divergence mechanisms in a single evolving population

(2012) Ram P Maharjan et al.   GENOME BIOLOGY

Emergent Neutrality in Adaptive Asexual Evolution

(2011) Stephan Schiffels et al.   GENETICS

Genotype and Phenotypes of an Intestine-Adapted Escherichia coli K-12 Mutant Selected by Animal Passage for Superior Colonization

(2011) Andrew J. Fabich et al.   INFECTION AND IMMUNITY

Anaerobic Respiration of Escherichia coli in the Mouse Intestine

(2011) Shari A. Jones et al.   INFECTION AND IMMUNITY

Insertion Sequence-Driven Evolution of Escherichia coli in Chemostats

(2011) Joël Gaffé et al.   JOURNAL OF MOLECULAR EVOLUTION

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Second-Order Selection for Evolvability in a Large Escherichia coli Population

(2011) R. J. Woods et al.   SCIENCE

Trade-Off between Bile Resistance and Nutritional Competence Drives Escherichia coli Diversification in the Mouse Gut

(2011) Marianne De Paepe et al.   PLoS Genetics

Escherichia coli rpoB Mutants Have Increased Evolvability in Proportion to Their Fitness Defects

(2010) J. E. Barrick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Beneficial mutations and the dynamics of adaptation in asexual populations

(2010) P. D. Sniegowski et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Optimal Strategy for Competence Differentiation in Bacteria

(2010) C. Scott Wylie et al.   PLoS Genetics

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS

Dissecting the Genetic Components of Adaptation of Escherichia coli to the Mouse Gut

(2008) Antoine Giraud et al.   PLoS Genetics