Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement

(2013) S.-H. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A MatP-divisome interaction coordinates chromosome segregation with cell division inE. coli

(2012) Olivier Espéli et al.   EMBO JOURNAL

The Escherichia coli SMC Complex, MukBEF, Shapes Nucleoid Organization Independently of DNA Replication

(2012) A. Badrinarayanan et al.   JOURNAL OF BACTERIOLOGY

Genomic Organization of Evolutionarily Correlated Genes in Bacteria: Limits and Strategies

(2012) Ivan Junier et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular Basis for a Protein-Mediated DNA-Bridging Mechanism that Functions in Condensation of the E. coli Chromosome

(2012) Pauline Dupaigne et al.   MOLECULAR CELL

Multidisciplinary perspectives on bacterial genome organization and dynamics

(2012) Remus T. Dame et al.   MOLECULAR MICROBIOLOGY

Variation of the folding and dynamics of theEscherichia colichromosome with growth conditions

(2012) Nastaran Hadizadeh Yazdi et al.   MOLECULAR MICROBIOLOGY

ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA

(2012) Aakash Basu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Regulatory Design Governing Progression of Population Growth Phases in Bacteria

(2012) Agustino Martínez-Antonio et al.   PLoS One

Physical manipulation of the Escherichia coli chromosome reveals its soft nature

(2012) J. Pelletier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

(2012) Vincenzo G Benza et al.   REPORTS ON PROGRESS IN PHYSICS

Rates of Gyrase Supercoiling and Transcription Elongation Control Supercoil Density in a Bacterial Chromosome

(2012) Nikolay Rovinskiy et al.   PLoS Genetics

Long-Range Chromosome Organization in E. coli: A Site-Specific System Isolates the Ter Macrodomain

(2012) Axel Thiel et al.   PLoS Genetics

A Fundamental Regulatory Mechanism Operating through OmpR and DNA Topology Controls Expression of Salmonella Pathogenicity Islands SPI-1 and SPI-2

(2012) Andrew D. S. Cameron et al.   PLoS Genetics

Location and dynamics of an active promoter inEscherichia coliK-12

(2011) María-Antonia Sánchez-Romero et al.   BIOCHEMICAL JOURNAL

The terminal region of the E. coli chromosome localises at the periphery of the nucleoid

(2011) Jean-Christophe Meile et al.   BMC MICROBIOLOGY

The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation

(2011) Mark A. Umbarger et al.   MOLECULAR CELL

A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation

(2011) Miriam Fritsche et al.   NUCLEIC ACIDS RESEARCH

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

(2011) P. Sobetzko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

(2011) W. Wang et al.   SCIENCE

Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria

(2011) Remus T. Dame et al.   PLoS Genetics

DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins

(2010) Renko de Vries   BIOCHIMIE

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

(2010) Douglas F Browning et al.   CURRENT OPINION IN MICROBIOLOGY

Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check

(2010) Nam Ky Tonthat et al.   EMBO JOURNAL

Gene clusters reflecting macrodomain structure respond to nucleoid perturbations

(2010) Vittore F. Scolari et al.   Molecular BioSystems

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

(2010) Shane C. Dillon et al.   MOLECULAR MICROBIOLOGY

Chromosomal periodicity and positional networks of genes in Escherichia coli

(2010) Anthony Mathelier et al.   Molecular Systems Biology

Spatial organization of the flow of genetic information in bacteria

(2010) Paula Montero Llopis et al.   NATURE

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament

(2010) P. A. Wiggins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Amplification and Adaptive Evolution in Bacteria

(2009) Dan I. Andersson et al.   Annual Review of Genetics

Active Transcription of rRNA Operons Condenses the Nucleoid in Escherichia coli: Examining the Effect of Transcription on Nucleoid Structure in the Absence of Transertion

(2009) J. E. Cabrera et al.   JOURNAL OF BACTERIOLOGY

Transcriptional regulation shapes the organization of genes on bacterial chromosomes

(2009) Sarath Chandra Janga et al.   NUCLEIC ACIDS RESEARCH

The MatP/matS Site-Specific System Organizes the Terminus Region of the E. coli Chromosome into a Macrodomain

(2008) Romain Mercier et al.   CELL

Bacterial DNA topology and infectious disease

(2008) C. J. Dorman et al.   NUCLEIC ACIDS RESEARCH

Spatial organization of a replicating bacterial chromosome

(2008) I. A. Berlatzky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA