Elevated Mutagenesis Does Not Explain the Increased Frequency of Antibiotic Resistant Mutants in Starved Aging Colonies

Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress

(2013) Alejandra Rodríguez-Verdugo et al.   BMC EVOLUTIONARY BIOLOGY

Evaluating evolutionary models of stress-induced mutagenesis in bacteria

(2013) R. Craig MacLean et al.   NATURE REVIEWS GENETICS

Clinically Relevant Mutant DNA Gyrase Alters Supercoiling, Changes the Transcriptome, and Confers Multidrug Resistance

(2013) M. A. Webber et al.   mBio

Microbial Scout Hypothesis, Stochastic Exit from Dormancy, and the Nature of Slow Growers

(2012) S. Buerger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cumulative Impact of Chaperone-Mediated Folding on Genome Evolution

(2012) David Bogumil et al.   BIOCHEMISTRY

Non-random mutation: The evolution of targeted hypermutation and hypomutation

(2012) Iñigo Martincorena et al.   BIOESSAYS

Stress-induced mutation via DNA breaks inEscherichia coli: A molecular mechanism with implications for evolution and medicine

(2012) Susan M. Rosenberg et al.   BIOESSAYS

Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes

(2012) Neus Sanchez-Alberola et al.   BMC GENOMICS

Implications of stress-induced genetic variation for minimizing multidrug resistance in bacteria

(2012) Uri Obolski et al.   BMC Medicine

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Culture History and Population Heterogeneity as Determinants of Bacterial Adaptation: the Adaptomics of a Single Environmental Transition

(2012) B. Ryall et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Competition between Transposable Elements and Mutator Genes in Bacteria

(2012) T. Feher et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identity and Function of a Large Gene Network Underlying Mutagenic Repair of DNA Breaks

(2012) A. A. M. Al Mamun et al.   SCIENCE

Identification and correction of systematic error in high-throughput sequence data

(2011) Frazer Meacham et al.   BMC BIOINFORMATICS

Sublethal Antibiotic Treatment Leads to Multidrug Resistance via Radical-Induced Mutagenesis

(2010) Michael A. Kohanski et al.   MOLECULAR CELL

How antibiotics kill bacteria: from targets to networks

(2010) Michael A. Kohanski et al.   NATURE REVIEWS MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DinB Upregulation Is the Sole Role of the SOS Response in Stress-Induced Mutagenesis in Escherichia coli

(2009) R. S. Galhardo et al.   GENETICS

The Fitness Cost of Streptomycin Resistance Depends on rpsL Mutation, Carbon Source and RpoS ( S)

(2009) W. Paulander et al.   GENETICS

Accumulation of mutants in "aging" bacterial colonies is due to growth under selection, not stress-induced mutagenesis

(2008) M. Wrande et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutability and Importance of a Hypermutable Cell Subpopulation that Produces Stress-Induced Mutants in Escherichia coli

(2008) Caleb Gonzalez et al.   PLoS Genetics