Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning
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Title
Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning
Authors
Keywords
-
Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 86, Issue -, Pages 84-96
Publisher
Wiley
Online
2017-10-19
DOI
10.1002/prot.25405
References
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Related references
Note: Only part of the references are listed.- ConEVA: a toolbox for comprehensive assessment of protein contacts
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- CONFOLD: Residue-residue contact-guidedab initioprotein folding
- (2015) Badri Adhikari et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations
- (2014) Stefan Seemayer et al. BIOINFORMATICS
- MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
- (2014) David T. Jones et al. BIOINFORMATICS
- FreeContact: fast and free software for protein contact prediction from residue co-evolution
- (2014) László Kaján et al. BMC BIOINFORMATICS
- Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns
- (2014) Marcin J. Skwark et al. PLoS Computational Biology
- Predicting protein contact map using evolutionary and physical constraints by integer programming
- (2013) Z. Wang et al. BIOINFORMATICS
- A study and benchmark of DNcon: a method for protein residue-residue contact prediction using deep networks
- (2013) Jesse Eickholt et al. BMC BIOINFORMATICS
- Deep architectures for protein contact map prediction
- (2012) Pietro Di Lena et al. BIOINFORMATICS
- Predicting protein residue–residue contacts using deep networks and boosting
- (2012) Jesse Eickholt et al. BIOINFORMATICS
- PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
- (2011) David T. Jones et al. BIOINFORMATICS
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- Optimal contact definition for reconstruction of Contact Maps
- (2010) Jose M Duarte et al. BMC BIOINFORMATICS
- Hidden Markov model speed heuristic and iterative HMM search procedure
- (2010) L Steven Johnson et al. BMC BIOINFORMATICS
- FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps
- (2008) Marco Vassura et al. BIOINFORMATICS
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