A study and benchmark of DNcon: a method for protein residue-residue contact prediction using deep networks

Deep architectures for protein contact map prediction

(2012) Pietro Di Lena et al.   BIOINFORMATICS

Predicting protein residue–residue contacts using deep networks and boosting

(2012) Jesse Eickholt et al.   BIOINFORMATICS

Predicting residue–residue contacts using random forest models

(2011) Yunqi Li et al.   BIOINFORMATICS

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

(2011) David T. Jones et al.   BIOINFORMATICS

Protein 3D Structure Computed from Evolutionary Sequence Variation

(2011) Debora S. Marks et al.   PLoS One

Improving Protein Structure Prediction Using Multiple Sequence-Based Contact Predictions

(2011) Sitao Wu et al.   STRUCTURE

A conformation ensemble approach to protein residue-residue contact

(2011) Jesse Eickholt et al.   BMC STRUCTURAL BIOLOGY

Optimal contact definition for reconstruction of Contact Maps

(2010) Jose M Duarte et al.   BMC BIOINFORMATICS

NNcon: improved protein contact map prediction using 2D-recursive neural networks

(2009) A. N. Tegge et al.   NUCLEIC ACIDS RESEARCH

Peptides modulating conformational changes in secreted chaperones: From in silico design to preclinical proof of concept

(2009) Y. Kliger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks

(2009) Ian Walsh et al.   BMC STRUCTURAL BIOLOGY

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

(2008) Sitao Wu et al.   BIOINFORMATICS