CONFOLD: Residue-residue contact-guidedab initioprotein folding

PconsFold: improved contact predictions improve protein models

(2014) Mirco Michel et al.   BIOINFORMATICS

CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations

(2014) Stefan Seemayer et al.   BIOINFORMATICS

MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins

(2014) David T. Jones et al.   BIOINFORMATICS

FreeContact: fast and free software for protein contact prediction from residue co-evolution

(2014) László Kaján et al.   BMC BIOINFORMATICS

Automated Procedure for Contact-Map-Based Protein Structure Reconstruction

(2014) Bogumil M. Konopka et al.   JOURNAL OF MEMBRANE BIOLOGY

De Novo Structure Prediction of Globular Proteins Aided by Sequence Variation-Derived Contacts

(2014) Tomasz Kosciolek et al.   PLoS One

Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns

(2014) Marcin J. Skwark et al.   PLoS Computational Biology

Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information

(2014) Sergey Ovchinnikov et al.   eLife

Predicting protein contact map using evolutionary and physical constraints by integer programming

(2013) Z. Wang et al.   BIOINFORMATICS

Assessment of CASP10 contact-assisted predictions

(2013) Todd J. Taylor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Definition and classification of evaluation units for CASP10

(2013) Todd J. Taylor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of residue-residue contact prediction in CASP10

(2013) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting protein residue–residue contacts using deep networks and boosting

(2012) Jesse Eickholt et al.   BIOINFORMATICS

Putting the Pieces Together: Integrative Modeling Platform Software for Structure Determination of Macromolecular Assemblies

(2012) Daniel Russel et al.   PLOS BIOLOGY

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

(2011) David T. Jones et al.   BIOINFORMATICS

Critical assessment of high-throughput standalone methods for secondary structure prediction

(2011) H. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

(2011) Eshel Faraggi et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Protein 3D Structure Computed from Evolutionary Sequence Variation

(2011) Debora S. Marks et al.   PLoS One

Evaluation of residue-residue contact predictions in CASP9

(2011) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Optimal contact definition for reconstruction of Contact Maps

(2010) Jose M Duarte et al.   BMC BIOINFORMATICS

NNcon: improved protein contact map prediction using 2D-recursive neural networks

(2009) A. N. Tegge et al.   NUCLEIC ACIDS RESEARCH

Defining an Essence of Structure Determining Residue Contacts in Proteins

(2009) R. Sathyapriya et al.   PLoS Computational Biology

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

(2008) Marco Vassura et al.   BIOINFORMATICS

Reconstruction of 3D Structures From Protein Contact Maps

(2008) M. Vassura et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

Pcons: A neural-network-based consensus predictor that improves fold recognition

(2002) Jesper Lundström et al.   PROTEIN SCIENCE