Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice

Rapid gene identification in sugar beet using deep sequencing of DNA from phenotypic pools selected from breeding panels

(2016) David Ries et al.   BMC GENOMICS

Unit and internal chain profile of African rice ( Oryza glaberrima ) amylopectin

(2016) Joseph Gayin et al.   CARBOHYDRATE POLYMERS

Bulked sample analysis in genetics, genomics and crop improvement

(2016) Cheng Zou et al.   PLANT BIOTECHNOLOGY JOURNAL

Systems Genetics Identifies a Novel Regulatory Domain of Amylose Synthesis

(2016) Vito M. Butardo et al.   PLANT PHYSIOLOGY

Relationship between structure and functional properties of normal rice starches with different amylose contents

(2015) Jinwen Cai et al.   CARBOHYDRATE POLYMERS

The biosynthesis, structure and gelatinization properties of starches from wild and cultivated African rice species (Oryza barthii and Oryza glaberrima)

(2015) Kai Wang et al.   CARBOHYDRATE POLYMERS

Classification of Rice Based on Statistical Analysis of Pasting Properties and Apparent Amylose Content: The Case of Oryza glaberrima Accessions from Africa

(2015) Joseph Gayin et al.   CEREAL CHEMISTRY

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

(2015) S. Das et al.   DNA RESEARCH

Determination of Apparent Amylose Content in Rice by Using Paper-Based Microfluidic Chips

(2015) Xianqiao Hu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

(2015) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

Next-generation sequencing for identification of candidate genes forFusariumwilt and sterility mosaic disease in pigeonpea (Cajanus cajan)

(2015) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

Extreme-phenotype genome-wide association study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel

(2015) Jinliang Yang et al.   PLANT JOURNAL

Molecular and thermal characterization of starches isolated from African rice (Oryza glaberrima)

(2015) Joseph Gayin et al.   STARCH-STARKE

Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq

(2015) Sunggil Kim et al.   THEORETICAL AND APPLIED GENETICS

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

Combining Next Generation Sequencing with Bulked Segregant Analysis to Fine Map a Stem Moisture Locus in Sorghum (Sorghum bicolor L. Moench)

(2015) Yucui Han et al.   PLoS One

Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast

(2014) Jorge Duitama et al.   BMC GENOMICS

Effects of glutelin and globulin on the physicochemical properties of rice starch and flour

(2014) Graeme Baxter et al.   JOURNAL OF CEREAL SCIENCE

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)

(2014) Benoit Nabholz et al.   MOLECULAR ECOLOGY

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

Modulation of amylose content by structure-based modification of OsGBSS1 activity in rice (Oryza sativaL.)

(2014) Derui Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Mapping mutations in plant genomes with the user-friendly web application CandiSNP

(2014) Graham J Etherington et al.   Plant Methods

An extensive analysis of the African rice genetic diversity through a global genotyping

(2014) Julie Orjuela et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Elucidating gene function and function evolution through comparison of co-expression networks of plants

(2014) Bjoern O. Hansen et al.   Frontiers in Plant Science

OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm

(2013) Jie-Chen Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis

(2012) Mitsuru MOMMA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Bulk segregant analysis: “An effective approach for mapping consistent-effect drought grain yield QTLs in rice”

(2012) Prashant Vikram et al.   FIELD CROPS RESEARCH

RiceFREND: a platform for retrieving coexpressed gene networks in rice

(2012) Yutaka Sato et al.   NUCLEIC ACIDS RESEARCH

Fast Isogenic Mapping-by-Sequencing of Ethyl Methanesulfonate-Induced Mutant Bulks

(2012) B. Hartwig et al.   PLANT PHYSIOLOGY

Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch

(2011) Guoyu Zhang et al.   GENOME

Impact of down-regulation of starch branching enzyme IIb in rice by artificial microRNA- and hairpin RNA-mediated RNA silencing

(2011) Vito M. Butardo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Crop genomics: advances and applications

(2011) Peter L. Morrell et al.   NATURE REVIEWS GENETICS

Molecular Aspect of Good Eating Quality Formation in Japonica Rice

(2011) Ming-Mao Sun et al.   PLoS One

Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences

(2011) Zhi-Ming Li et al.   THEORETICAL AND APPLIED GENETICS

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

Relationship between the structure, physicochemical properties and in vitro digestibility of rice starches with different amylose contents

(2010) Hyun-Jung Chung et al.   FOOD HYDROCOLLOIDS

Genome-wide analysis of NAC transcription factor family in rice

(2010) Mohammed Nuruzzaman et al.   GENE

Polymorphism in the GBSS gene affects amylose content in US and European rice germplasm

(2010) Macaire Dobo et al.   JOURNAL OF CEREAL SCIENCE

Efficiency of selective genotyping for genetic analysis of complex traits and potential applications in crop improvement

(2010) Yanping Sun et al.   MOLECULAR BREEDING

Dissection of genetically complex traits with extremely large pools of yeast segregants

(2010) Ian M. Ehrenreich et al.   NATURE

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

(2010) Y. Sato et al.   NUCLEIC ACIDS RESEARCH

Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator

(2010) F.-F. Fu et al.   PLANT PHYSIOLOGY

Q-TARO: QTL Annotation Rice Online Database

(2010) Jun-ichi Yonemaru et al.   Rice

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks

(2009) K. Vandepoele et al.   PLANT PHYSIOLOGY

Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities

(2009) Z. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the cis-regulatory elements of co-expressed genes in PCOS by in silico analysis

(2007) Chiradeep Sarkar et al.   GENE