Bacterial rather than fungal community composition is associated with microbial activities and nutrient-use efficiencies in a paddy soil with short-term organic amendments

Bacterial Community Structure after Long-term Organic and Inorganic Fertilization Reveals Important Associations between Soil Nutrients and Specific Taxa Involved in Nutrient Transformations

(2017) Fang Li et al.   Frontiers in Microbiology

Effects of combined application of organic amendments and fertilizers on crop yield and soil organic matter: An integrated analysis of long-term experiments

(2016) Wenliang Wei et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Microbial communities of an arable soil treated for 8 years with organic and inorganic fertilizers

(2016) Chen Chen et al.   BIOLOGY AND FERTILITY OF SOILS

Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter

(2016) Ruibo Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Long-term fertilizer and crop-rotation treatments differentially affect soil bacterial community structure

(2016) Chinmay Soman et al.   PLANT AND SOIL

Substrate quality affects kinetics and catalytic efficiency of exo-enzymes in rhizosphere and detritusphere

(2016) Sebastian Loeppmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen fertilization induced changes in ammonia oxidation are attributable mostly to bacteria rather than archaea in greenhouse-based high N input vegetable soil

(2016) Wenhui Zhong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Responses of microbial activity, abundance, and community in wheat soil after three years of heavy fertilization with manure-based compost and inorganic nitrogen

(2015) Wei Tian et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Genomic analysis of Luteimonas abyssi XH031T: insights into its adaption to the subseafloor environment of South Pacific Gyre and ecological role in biogeochemical cycle

(2015) Li Zhang et al.   BMC GENOMICS

The application of ecological stoichiometry to plant–microbial–soil organic matter transformations

(2015) Sophie Zechmeister-Boltenstern et al.   ECOLOGICAL MONOGRAPHS

Luteimonas soli sp. nov., isolated from farmland soil

(2015) Xiang Wang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Differential responses of soil bacterial taxa to long-term P, N, and organic manure application

(2015) Ying Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

(2015) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of long-term N additions upon coupling between soil microbial community structure and activity, and nutrient-use efficiencies

(2015) Yangquanwei Zhong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

(2014) Harald Cederlund et al.   APPLIED SOIL ECOLOGY

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling

(2014) Maria Mooshammer et al.   Nature Communications

Soil fungal communities and enzyme activities in a sandy, highly weathered tropical soil treated with biochemically contrasting organic inputs

(2013) Bhanudacha Kamolmanit et al.   BIOLOGY AND FERTILITY OF SOILS

Animal manure application and soil organic carbon stocks: a meta-analysis

(2013) Émilie Maillard et al.   GLOBAL CHANGE BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon

(2013) Woo Jun Sul et al.   SOIL BIOLOGY & BIOCHEMISTRY

Probing potential microbial coupling of carbon and nitrogen cycling during decomposition of maize residue by 13C-DNA-SIP

(2013) Fenliang Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape

(2013) Timothy M. Bowles et al.   SOIL BIOLOGY & BIOCHEMISTRY

Short-term effects of organic and inorganic fertilizers on soil microbial community structure and function

(2012) Cristina Lazcano et al.   BIOLOGY AND FERTILITY OF SOILS

Luteimonas vadosa sp. nov., isolated from seashore sediment

(2012) L. A. Romanenko et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Environmental and stoichiometric controls on microbial carbon-use efficiency in soils

(2012) Stefano Manzoni et al.   NEW PHYTOLOGIST

Controls over soil microbial biomass responses to carbon amendments in agricultural systems: A meta-analysis

(2011) Cynthia Kallenbach et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation and characterization of a novel biomineral stalk-forming iron-oxidizing bacterium from a circumneutral groundwater seep

(2011) Sean T. Krepski et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of extracellular enzyme activities and microbial community in both the rhizosphere and bulk soil to long-term fertilization practices in a fluvo-aquic soil

(2011) Chao Ai et al.   GEODERMA

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management

(2010) Ella Wessén et al.   SOIL BIOLOGY & BIOCHEMISTRY

Priming effects: Interactions between living and dead organic matter

(2010) Yakov Kuzyakov   SOIL BIOLOGY & BIOCHEMISTRY

Considering fungal:bacterial dominance in soils – Methods, controls, and ecosystem implications

(2010) Michael S. Strickland et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of time, storage temperature, and substrate age on potential soil enzyme activity in acidic forest soils using MUB-linked substrates and l-DOPA

(2009) Jared L. DeForest   SOIL BIOLOGY & BIOCHEMISTRY

Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities

(2009) Nathalie J.A. Curlevski et al.   SOIL BIOLOGY & BIOCHEMISTRY

Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems

(2008) Roberto García-Ruiz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soils and sustainable agriculture. A review

(2007) R. Lal   Agronomy for Sustainable Development