Differential responses of soil bacterial taxa to long-term P, N, and organic manure application

Effects of nitrogen deposition rates and frequencies on the abundance of soil nitrogen-related functional genes in temperate grassland of northern China

(2015) Qiushi Ning et al.   JOURNAL OF SOILS AND SEDIMENTS

In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)

(2015) Noha H. Youssef et al.   PLoS One

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

(2014) Harald Cederlund et al.   APPLIED SOIL ECOLOGY

Changes in soil microbial community composition in response to fertilization of paddy soils in subtropical China

(2014) Wen-Yi Dong et al.   APPLIED SOIL ECOLOGY

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil

(2014) Yao Pan et al.   FEMS MICROBIOLOGY ECOLOGY

The unseen world: environmental microbial sequencing and identification methods for ecologists

(2014) Naupaka Zimmerman et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Interactive effects of C, N and P fertilization on soil microbial community structure and function in an Amazonian rain forest

(2014) Nicolas Fanin et al.   FUNCTIONAL ECOLOGY

Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil

(2014) Jian-Qiang Su et al.   MOLECULAR ECOLOGY

Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea

(2014) Kateryna V. Zhalnina et al.   PLoS One

Change in deep soil microbial communities due to long-term fertilization

(2014) Chenhua Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rate-specific responses of prokaryotic diversity and structure to nitrogen deposition in the Leymus chinensis steppe

(2014) Minjie Yao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of inorganic fertilizer and manure on soil archaeal abundance at two experimental farms during three consecutive rotation-cropping seasons

(2013) Yiu-Kwok Chan et al.   APPLIED SOIL ECOLOGY

Manure fertilization alters the population of ammonia-oxidizing bacteria rather than ammonia-oxidizing archaea in a paddy soil

(2013) Yu Wang et al.   JOURNAL OF BASIC MICROBIOLOGY

How different long-term fertilization strategies influence crop yield and soil properties in a maize field in the North China Plain

(2013) Bingzi Zhao et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The Rhizosphere Selects for Particular Groups of Acidobacteria and Verrucomicrobia

(2013) Ulisses Nunes da Rocha et al.   PLoS One

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

(2013) Kateryna Zhalnina et al.   Frontiers in Microbiology

Selection for Cu-Tolerant Bacterial Communities with Altered Composition, but Unaltered Richness, via Long-Term Cu Exposure

(2012) Jeanette Berg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An assessment of the soil microbial status after 17 years of tillage and mineral P fertilization management

(2012) Yichao Shi et al.   APPLIED SOIL ECOLOGY

Chemical fertilizer and organic manure inputs in soil exhibit a vice versa pattern of microbial community structure

(2012) Qi-Chun Zhang et al.   APPLIED SOIL ECOLOGY

Response of soil microbial communities to contrasted histories of phosphorus fertilisation in pastures

(2012) Steve Wakelin et al.   APPLIED SOIL ECOLOGY

Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils

(2012) Hao Tan et al.   BIOLOGY AND FERTILITY OF SOILS

Chronic N-amended soils exhibit an altered bacterial community structure in Harvard Forest, MA, USA

(2012) Swathi A. Turlapati et al.   FEMS MICROBIOLOGY ECOLOGY

Ecosystem processes and interactions in a morass of diversity

(2012) James I. Prosser   FEMS MICROBIOLOGY ECOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Effect of long-term fertilization on bacterial composition in rice paddy soil

(2011) Minna Wu et al.   BIOLOGY AND FERTILITY OF SOILS

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Soil organic carbon dynamics in a dryland cereal cropping system of the Loess Plateau under long-term nitrogen fertilizer applications

(2011) Shengli Guo et al.   PLANT AND SOIL

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

(2010) Barbara J. Campbell et al.   ENVIRONMENTAL MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management

(2010) Ella Wessén et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment

(2009) Sara Hallin et al.   ISME Journal

Long-Term Phosphorus Fertilization Impacts Soil Fungal and Bacterial Diversity but not AM Fungal Community in Alfalfa

(2009) M. S. Beauregard et al.   MICROBIAL ECOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Phylogenetic diversity of Acidobacteria in a former agricultural soil

(2008) Anna Kielak et al.   ISME Journal

Distantly sampled soils carry few species in common

(2008) Roberta R Fulthorpe et al.   ISME Journal

Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China

(2008) Yuan Ge et al.   JOURNAL OF SOILS AND SEDIMENTS

Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches

(2008) Ji-Zheng He et al.   JOURNAL OF SOILS AND SEDIMENTS

Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems

(2008) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY