Bacterial Community Structure after Long-term Organic and Inorganic Fertilization Reveals Important Associations between Soil Nutrients and Specific Taxa Involved in Nutrient Transformations

Effects of combined application of organic amendments and fertilizers on crop yield and soil organic matter: An integrated analysis of long-term experiments

(2016) Wenliang Wei et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of northeast China

(2016) Jianli Ding et al.   APPLIED SOIL ECOLOGY

Microbial communities of an arable soil treated for 8 years with organic and inorganic fertilizers

(2016) Chen Chen et al.   BIOLOGY AND FERTILITY OF SOILS

Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter

(2016) Thea Whitman et al.   ISME Journal

Structural and functional differentiation of the root-associated bacterial microbiomes of perennial ryegrass

(2016) Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Consistent responses of the microbial community structure to organic farming along the middle and lower reaches of the Yangtze River

(2016) Wenhui Wang et al.   Scientific Reports

Bacterial community structure in maize stubble-amended soils with different moisture levels estimated by bar-coded pyrosequencing

(2015) Lin Chen et al.   APPLIED SOIL ECOLOGY

Arenimonas subflava sp. nov., isolated from a drinking water network, and emended description of the genus Arenimonas

(2015) Judit Makk et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

(2015) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of long-term N additions upon coupling between soil microbial community structure and activity, and nutrient-use efficiencies

(2015) Yangquanwei Zhong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thirteen years of continued application of composted organic wastes in a vineyard modify soil quality characteristics

(2015) María Eréndira Calleja-Cervantes et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in northeast China

(2015) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

High quality draft genomic sequence of Arenimonas donghaensis DSM 18148T

(2015) Fang Chen et al.   Standards in Genomic Sciences

Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing

(2015) Lin Chen et al.   Frontiers in Microbiology

Metatranscriptomic Analysis of Arctic Peat Soil Microbiota

(2014) Alexander T. Tveit et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

(2014) Harald Cederlund et al.   APPLIED SOIL ECOLOGY

Biochar Impacts Soil Microbial Community Composition and Nitrogen Cycling in an Acidic Soil Planted with Rape

(2014) Hui-Juan Xu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil

(2014) Jian-Qiang Su et al.   MOLECULAR ECOLOGY

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Structure, Composition and Metagenomic Profile of Soil Microbiomes Associated to Agricultural Land Use and Tillage Systems in Argentine Pampas

(2014) Belén Carbonetto et al.   PLoS One

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

(2013) Chuntao Yin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect

(2013) Noémie Pascault et al.   ECOSYSTEMS

Diversity and structure of bacterial communities associated withPhanerochaete chrysosporiumduring wood decay

(2013) Vincent Hervé et al.   ENVIRONMENTAL MICROBIOLOGY

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

The effects of 55 years of different inorganic fertiliser regimes on soil properties and microbial community composition

(2013) Alwyn Williams et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon

(2013) Woo Jun Sul et al.   SOIL BIOLOGY & BIOCHEMISTRY

Myxobacterial community is a predominant and highly diverse bacterial group in soil niches

(2013) Xiu-wen Zhou et al.   Environmental Microbiology Reports

Short-term effects of organic and inorganic fertilizers on soil microbial community structure and function

(2012) Cristina Lazcano et al.   BIOLOGY AND FERTILITY OF SOILS

Comparative genomic and physiological analysis provides insights into the role ofAcidobacteriain organic carbon utilization in Arctic tundra soils

(2012) Suman R. Rawat et al.   FEMS MICROBIOLOGY ECOLOGY

Arenimonas daechungensis sp. nov., isolated from the sediment of a eutrophic reservoir

(2012) H. Huy et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Comparing the yields of organic and conventional agriculture

(2012) Verena Seufert et al.   NATURE

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of selected root exudate components on soil bacterial communities

(2011) Shengjing Shi et al.   FEMS MICROBIOLOGY ECOLOGY

Arenimonas daejeonensis sp. nov., isolated from compost

(2011) L. Jin et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Impact of long-term fertilization practices on the abundance and composition of soil bacterial communities in Northeast China

(2010) Ju-Pei Shen et al.   APPLIED SOIL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Long-term effect of chemical fertilizer, straw, and manure on soil chemical and biological properties in northwest China

(2010) Enke Liu et al.   GEODERMA

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term no-till management affects microbial biomass but not community composition in Canadian prairie agroecosytems

(2010) B.L. Helgason et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest

(2010) Diana R. Nemergut et al.   SOIL BIOLOGY & BIOCHEMISTRY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

(2009) Larissa B. Folman et al.   FEMS MICROBIOLOGY ECOLOGY

Long-term manure and fertilizer effects on soil organic matter fractions and microbes under a wheat–maize cropping system in northern China

(2009) Wei Gong et al.   GEODERMA

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

The contribution of manure and fertilizer nitrogen to atmospheric nitrous oxide since 1860

(2009) Eric A. Davidson   Nature Geoscience

The effects of mineral fertilizer and organic manure on soil microbial community and diversity

(2009) Wenhui Zhong et al.   PLANT AND SOIL

Mechanisms of real and apparent priming effects and their dependence on soil microbial biomass and community structure: critical review

(2008) Е. Blagodatskaya et al.   BIOLOGY AND FERTILITY OF SOILS