SRNAome and degradome sequencing analysis reveals specific regulation of sRNA in response to chilling injury in tomato fruit

A comparison of the low temperature transcriptomes of two tomato genotypes that differ in freezing tolerance: Solanum lycopersicum and Solanum habrochaites

(2015) Hongyu Chen et al.   BMC PLANT BIOLOGY

Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

(2015) Xue Cao et al.   BMC GENOMICS

Endogenous small-noncoding RNAs and their roles in chilling response and stress acclimation in Cassava

(2014) Jing Xia et al.   BMC GENOMICS

Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize

(2014) Flávia Thiebaut et al.   BMC GENOMICS

Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis

(2014) Yue Zhang et al.   BMC PLANT BIOLOGY

The Relationship between the Expression of Ethylene-Related Genes and Papaya Fruit Ripening Disorder Caused by Chilling Injury

(2014) Yuan Zou et al.   PLoS One

Mitigation of postharvest chilling injury in tomato fruit by prohexadione calcium

(2013) Morteza Soleimani Aghdam   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

Hot air treatment-induced arginine catabolism is associated with elevated polyamines and proline levels and alleviates chilling injury in postharvest tomato fruit

(2013) Xinhua Zhang et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

SRNAome parsing yields insights into tomato fruit ripening control

(2013) Jinhua Zuo et al.   PHYSIOLOGIA PLANTARUM

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

(2012) Jinhua Zuo et al.   BMC GENOMICS

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

Alleviation of postharvest chilling injury of tomato fruit by salicylic acid treatment

(2012) Morteza Soleimani Aghdam et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs

(2012) P. V. Shivaprasad et al.   PLANT CELL

SoMART: a web server for plant miRNA, tasiRNA and target gene analysis

(2012) Feng Li et al.   PLANT JOURNAL

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function

(2012) Xiaoming Zhang et al.   GENOME BIOLOGY

Apple miRNAs and tasiRNAs with novel regulatory networks

(2012) Rui Xia et al.   GENOME BIOLOGY

Methyl jasmonate deficiency alters cellular metabolome, including the aminome of tomato (Solanum lycopersicum L.) fruit

(2011) Kurt D. Kausch et al.   AMINO ACIDS

Genome-wide identification of cold-responsive and new microRNAs in Populus tomentosa by high-throughput sequencing

(2011) Lei Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fatty acid composition and antioxidant system in relation to susceptibility of loquat fruit to chilling injury

(2011) Shifeng Cao et al.   FOOD CHEMISTRY

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns

(2011) Irina Mohorianu et al.   PLANT JOURNAL

Sequencing-Based Approaches Reveal Low Ambient Temperature-Responsive and Tissue-Specific MicroRNAs in Phalaenopsis Orchid

(2011) Feng-Ming An et al.   PLoS One

MicroRNAs in tomato plants

(2011) JinHua Zuo et al.   Science China-Life Sciences

Profiling of cold-stress-responsive miRNAs in rice by microarrays

(2010) De-Kang Lv et al.   GENE

Short RNAs in Tomato

(2010) Tamas Dalmay   Journal of Integrative Plant Biology

Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis

(2010) Hanna Lee et al.   NUCLEIC ACIDS RESEARCH

MeJA regulates enzymes involved in ascorbic acid and glutathione metabolism and improves chilling tolerance in loquat fruit

(2010) Yuting Cai et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

Recent advances in arginine metabolism: roles and regulation of the arginases

(2009) Sidney M Morris Jr   BRITISH JOURNAL OF PHARMACOLOGY

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Regulation and functional specialization of small RNA–target nodes during plant development

(2009) Ignacio Rubio-Somoza et al.   CURRENT OPINION IN PLANT BIOLOGY

Environmental conditions affect pectin solubilization in cherry tomato fruits grown in two experimental Mediterranean greenhouses

(2009) Miguel A. Rosales et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Physiological and Genetic Properties of Tomato Fruits from 2 Cultivars Differing in Chilling Tolerance at Cold Storage

(2009) D.Y. Zhao et al.   JOURNAL OF FOOD SCIENCE

A three-dimensional view of the molecular machinery of RNA interference

(2009) Martin Jinek et al.   NATURE

Identification of cold-inducible microRNAs in plants by transcriptome analysis

(2008) X ZHOU et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis

(2008) Hailing Jin et al.   BMC MOLECULAR BIOLOGY

Sorting Out Small RNAs

(2008) V. Narry Kim   CELL

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa

(2008) X. Zhou et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA