SoMART: a web server for plant miRNA, tasiRNA and target gene analysis

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana

(2011) Yun Ju Kim et al.   EMBO JOURNAL

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

(2011) Xiaoming Zhang et al.   MOLECULAR CELL

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics

(2010) Koh Aoki et al.   BMC GENOMICS

Identification, characterization and expression analysis of MicroRNAs and their targets in the potato (Solanum tuberosum)

(2010) Fuliang Xie et al.   GENE

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRNAs in the biogenesis of trans-acting siRNAs in higher plants

(2010) Edwards Allen et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Genome-Wide Double-Stranded RNA Sequencing Reveals the Functional Significance of Base-Paired RNAs in Arabidopsis

(2010) Qi Zheng et al.   PLoS Genetics

RNA Secondary Structural Determinants of miRNA Precursor Processing in Arabidopsis

(2009) Liang Song et al.   CURRENT BIOLOGY

Regulation and functional specialization of small RNA–target nodes during plant development

(2009) Ignacio Rubio-Somoza et al.   CURRENT OPINION IN PLANT BIOLOGY

Graft-transmissible induction of potato tuberization by the microRNA miR172

(2009) A. Martin et al.   DEVELOPMENT

DIANA-microT web server: elucidating microRNA functions through target prediction

(2009) M. Maragkakis et al.   NUCLEIC ACIDS RESEARCH

Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs

(2009) ALEJANDRA A. COVARRUBIAS et al.   PLANT CELL AND ENVIRONMENT

Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome

(2009) C. Addo-Quaye et al.   RNA

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

MicroRNA maturation and action—the expanding roles of ARGONAUTEs

(2008) Allison C Mallory et al.   CURRENT OPINION IN PLANT BIOLOGY

A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development

(2008) Brian D. Gregory et al.   DEVELOPMENTAL CELL

Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR classRgene-derived novel miRNA in Brassica

(2008) Xiang-Feng He et al.   FEBS LETTERS

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs

(2008) H. Kuang et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution

(2008) Katsutomo Okamura et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

How to usefully compare homologous plant genes and chromosomes as DNA sequences

(2008) Eric Lyons et al.   PLANT JOURNAL

The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1

(2008) Z. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE