An ontology for microbial phenotypes

Metabolic flux analysis of Escherichia coli knockouts: lessons from the Keio collection and future outlook

(2014) Christopher P Long et al.   CURRENT OPINION IN BIOTECHNOLOGY

Standardized description of scientific evidence using the Evidence Ontology (ECO)

(2014) M. C. Chibucos et al.   Database-The Journal of Biological Databases and Curation

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio

(2014) Ceri E Van Slyke et al.   Journal of Biomedical Semantics

FYPO: the fission yeast phenotype ontology

(2013) M. A. Harris et al.   BIOINFORMATICS

The intrinsic resistome of bacterial pathogens

(2013) Jorge Olivares et al.   Frontiers in Microbiology

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community

(2011) Gary Schindelman et al.   BMC BIOINFORMATICS

GONUTS: the Gene Ontology Normal Usage Tracking System

(2011) Daniel P. Renfro et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

PomBase: a comprehensive online resource for fission yeast

(2011) V. Wood et al.   NUCLEIC ACIDS RESEARCH

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

Integrating phenotype ontologies across multiple species

(2010) Christopher J Mungall et al.   GENOME BIOLOGY

Genetic Suppressors and Recovery of Repressed Biochemical Memory

(2009) Jon Beckwith   JOURNAL OF BIOLOGICAL CHEMISTRY

Saccharomyces Genome Database provides mutant phenotype data

(2009) S. R. Engel et al.   NUCLEIC ACIDS RESEARCH

BioPortal: ontologies and integrated data resources at the click of a mouse

(2009) N. F. Noy et al.   NUCLEIC ACIDS RESEARCH

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

(2008) Evert Blom et al.   BMC GENOMICS

eSGA: E. coli synthetic genetic array analysis

(2008) Gareth Butland et al.   NATURE METHODS

High-throughput, quantitative analyses of genetic interactions in E. coli

(2008) Athanasios Typas et al.   NATURE METHODS

The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

(2008) Marco Punta et al.   PLoS Computational Biology