Identification of DNA–protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Identification of DNA–protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information
Authors
Keywords
-
Journal
MOLECULES
Volume 22, Issue 12, Pages 2079
Publisher
MDPI AG
Online
2017-11-29
DOI
10.3390/molecules22122079
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs
- (2017) Jun Hu et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information
- (2017) Leyi Wei et al. INFORMATION SCIENCES
- Identification of drug-target interactions via multiple information integration
- (2017) Yijie Ding et al. INFORMATION SCIENCES
- An Ameliorated Prediction of Drug–Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features
- (2017) Cong Shen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- PCVMZM: Using the Probabilistic Classification Vector Machines Model Combined with a Zernike Moments Descriptor to Predict Protein–Protein Interactions from Protein Sequences
- (2017) Yanbin Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Predicting S-sulfenylation Sites Using Physicochemical Properties Differences
- (2017) Guo-Cheng Lei et al. LETTERS IN ORGANIC CHEMISTRY
- Predicting protein lysine phosphoglycerylation sites by hybridizing many sequence based features
- (2017) Qing-Yun Chen et al. Molecular BioSystems
- Improved detection of DNA-binding proteins via compression technology on PSSM information
- (2017) Yubo Wang et al. PLoS One
- Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution
- (2017) Gaofeng Pan et al. Scientific Reports
- Predicting protein-protein interactions via multivariate mutual information of protein sequences
- (2016) Yijie Ding et al. BMC BIOINFORMATICS
- Sequence-based prediction of protein-protein interactions using weighted sparse representation model combined with global encoding
- (2016) Yu-An Huang et al. BMC BIOINFORMATICS
- Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy
- (2016) Quan Zou et al. BMC Systems Biology
- A novel features ranking metric with application to scalable visual and bioinformatics data classification
- (2016) Quan Zou et al. NEUROCOMPUTING
- An Overview of the Prediction of Protein DNA-Binding Sites
- (2015) Jingna Si et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- Computational learning on specificity-determining residue-nucleotide interactions
- (2015) Ka-Chun Wong et al. NUCLEIC ACIDS RESEARCH
- A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs
- (2015) Zhichao Miao et al. PLoS Computational Biology
- Using Weighted Sparse Representation Model Combined with Discrete Cosine Transformation to Predict Protein-Protein Interactions from Protein Sequence
- (2015) Yu-An Huang et al. Biomed Research International
- Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods
- (2015) Quan Zou et al. Biomed Research International
- Predicting DNA-binding sites of proteins based on sequential and 3D structural information
- (2014) Bi-Qing Li et al. MOLECULAR GENETICS AND GENOMICS
- The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
- (2014) Peter W. Rose et al. NUCLEIC ACIDS RESEARCH
- Learning a Weighted Meta-Sample Based Parameter Free Sparse Representation Classification for Microarray Data
- (2014) Bo Liao et al. PLoS One
- PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information
- (2013) Tao Li et al. BIOINFORMATICS
- Designing Template-Free Predictor for Targeting Protein-Ligand Binding Sites with Classifier Ensemble and Spatial Clustering
- (2013) Dong-Jun Yu et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy
- (2013) Chen Lin et al. NEUROCOMPUTING
- Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier
- (2013) Chen Lin et al. PLoS One
- Shape string: A new feature for prediction of DNA-binding residues
- (2012) Duo-Duo Wang et al. BIOCHIMIE
- Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information
- (2012) Xin Ma et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Face recognition via Weighted Sparse Representation
- (2012) Can-Yi Lu et al. JOURNAL OF VISUAL COMMUNICATION AND IMAGE REPRESENTATION
- DSP: a protein shape string and its profile prediction server
- (2012) J. Sun et al. NUCLEIC ACIDS RESEARCH
- BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions
- (2012) Jianyi Yang et al. NUCLEIC ACIDS RESEARCH
- Sann: Solvent accessibility prediction of proteins by nearest neighbor method
- (2012) Keehyoung Joo et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- LIBSVM
- (2012) Chih-Chung Chang et al. ACM Transactions on Intelligent Systems and Technology
- MetaDBSite: a meta approach to improve protein DNA-binding sites prediction
- (2011) Jingna Si et al. BMC Systems Biology
- Optimization meets systems biology
- (2010) Yong Wang et al. BMC Systems Biology
- A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
- (2010) D.N. Georgiou et al. JOURNAL OF THEORETICAL BIOLOGY
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Prediction of DNA-binding residues from protein sequence information using random forests
- (2009) Liangjiang Wang et al. BMC GENOMICS
- Robust Face Recognition via Sparse Representation
- (2009) J. Wright et al. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE
- ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors
- (2009) Wen-Yi Chu et al. NUCLEIC ACIDS RESEARCH
- DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions
- (2008) Mu Gao et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started