Purifying and Positive Selection Influence Patterns of Gene Loss and Gene Expression in the Evolution of a Plant Sex Chromosome System

Compensation of Dosage-Sensitive Genes on the Chicken Z Chromosome

(2016) Fabian Zimmer et al.   Genome Biology and Evolution

Gene Loss from a Plant Sex Chromosome System

(2015) Roberta Bergero et al.   CURRENT BIOLOGY

Sex Chromosome Dosage Compensation inHeliconiusButterflies: Global yet Still Incomplete?

(2015) James R. Walters et al.   Genome Biology and Evolution

Partial Dosage Compensation in Strepsiptera, a Sister Group of Beetles

(2015) Shivani Mahajan et al.   Genome Biology and Evolution

Origin and domestication of papaya Yhchromosome

(2015) Robert VanBuren et al.   GENOME RESEARCH

Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome

(2015) Michael A. White et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus)

(2015) A. Geraldes et al.   MOLECULAR ECOLOGY

Rapid Y degeneration and dosage compensation in plant sex chromosomes

(2015) Alexander S. T. Papadopulos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of dosage compensation under sexual selection differs between X and Z chromosomes

(2015) Charles Mullon et al.   Nature Communications

Numerous Transitions of Sex Chromosomes in Diptera

(2015) Beatriz Vicoso et al.   PLOS BIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Positive and Purifying Selection on the Drosophila Y Chromosome

(2014) Nadia D. Singh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

(2014) Daniel W. Bellott et al.   NATURE

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus

(2014) J. Hough et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Complex evolutionary trajectories of sex chromosomes across bird taxa

(2014) Q. Zhou et al.   SCIENCE

EVOLUTIONARILY STABLE SEX RATIOS AND MUTATION LOAD

(2013) Josh Hough et al.   EVOLUTION

Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa

(2013) Pavlina Steflova et al.   Genome Biology and Evolution

Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers

(2013) Severin Uebbing et al.   Genome Biology and Evolution

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Expansion of Microsatellites on Evolutionary Young Y Chromosome

(2013) Eduard Kejnovský et al.   PLoS One

Sex chromosome dosage compensation: definitely not for everyone

(2013) Judith E. Mank   TRENDS IN GENETICS

Comparative Sex Chromosome Genomics in Snakes: Differentiation, Evolutionary Strata, and Lack of Global Dosage Compensation

(2013) Beatriz Vicoso et al.   PLOS BIOLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis

(2012) Said Hafidh et al.   BMC PLANT BIOLOGY

Chromosome-Wide Gene Silencing Initiates Y Degeneration in Drosophila

(2012) Qi Zhou et al.   CURRENT BIOLOGY

The Influence of Pollination Intensity on Fertilization Success, Progeny Sex Ratio, and Fitness in a Wind-Pollinated, Dioecious Plant

(2012) David L. Field et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome

(2012) E. Pessia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid De Novo Evolution of X Chromosome Dosage Compensation in Silene latifolia, a Plant with Young Sex Chromosomes

(2012) Aline Muyle et al.   PLOS BIOLOGY

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

Mediation of Drosophila autosomal dosage effects and compensation by network interactions

(2012) John H Malone et al.   GENOME BIOLOGY

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Plant Y Chromosome Degeneration Is Retarded by Haploid Purifying Selection

(2011) Margarita V. Chibalina et al.   CURRENT BIOLOGY

A satellite DNA evolutionary analysis in the North American endemic dioecious plant Rumex hastatulus (Polygonaceae)

(2011) M.E. Quesada del Bosque et al.   GENOME

Nonrandom Gene Loss from the Drosophila miranda Neo-Y Chromosome

(2011) Vera B. Kaiser et al.   Genome Biology and Evolution

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Are all sex chromosomes created equal?

(2011) Doris Bachtrog et al.   TRENDS IN GENETICS

Muller's Ratchet and the Degeneration of the Drosophila miranda Neo-Y Chromosome

(2010) V. B. Kaiser et al.   GENETICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Progress and prospects toward our understanding of the evolution of dosage compensation

(2009) Beatriz Vicoso et al.   CHROMOSOME RESEARCH

Origin and evolution of Y chromosomes: Drosophila tales

(2009) A. Bernardo Carvalho et al.   TRENDS IN GENETICS

The Temporal Dynamics of Processes Underlying Y Chromosome Degeneration

(2008) D. Bachtrog   GENETICS

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

(2008) F. Veyrunes et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Comparative Transcriptomics of Arabidopsis Sperm Cells

(2008) F. Borges et al.   PLANT PHYSIOLOGY