Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus

Dosage compensation and inverse effects in triple X metafemales of Drosophila

(2013) L. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila

(2013) L. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex chromosome dosage compensation: definitely not for everyone

(2013) Judith E. Mank   TRENDS IN GENETICS

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Chromosome-Wide Gene Silencing Initiates Y Degeneration in Drosophila

(2012) Qi Zhou et al.   CURRENT BIOLOGY

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

(2012) Jennifer F. Hughes et al.   NATURE

Rapid divergence and expansion of the X chromosome in papaya

(2012) A. R. Gschwend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution

(2012) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

Rapid De Novo Evolution of X Chromosome Dosage Compensation in Silene latifolia, a Plant with Young Sex Chromosomes

(2012) Aline Muyle et al.   PLOS BIOLOGY

Mediation of Drosophila autosomal dosage effects and compensation by network interactions

(2012) John H Malone et al.   GENOME BIOLOGY

Preservation of the Y Transcriptome in a 10-Million-Year-Old Plant Sex Chromosome System

(2011) Roberta Bergero et al.   CURRENT BIOLOGY

Plant Y Chromosome Degeneration Is Retarded by Haploid Purifying Selection

(2011) Margarita V. Chibalina et al.   CURRENT BIOLOGY

Nonrandom Gene Loss from the Drosophila miranda Neo-Y Chromosome

(2011) Vera B. Kaiser et al.   Genome Biology and Evolution

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

(2010) Jennifer F. Hughes et al.   NATURE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

(2009) Jacob F. Degner et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Chicken (Gallus gallus) Z Chromosome Contains at Least Three Nonlinear Evolutionary Strata

(2008) K. Nam et al.   GENETICS

Genome structure and emerging evidence of an incipient sex chromosome in Populus

(2008) T. Yin et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome

(2008) R B Spigler et al.   HEREDITY