Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers

Lack of Dosage Compensation Accompanies the Arrested Stage of Sex Chromosome Evolution in Ostriches

(2013) Sofia Adolfsson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

(2013) B. Vicoso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trade-off Between Selection for Dosage Compensation and Masculinization on the Avian Z Chromosome

(2012) Alison E. Wright et al.   GENETICS

Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly

(2012) Peter W. Harrison et al.   Genome Biology and Evolution

Buffering and proteolysis are induced by segmental monosomy in Drosophila melanogaster

(2012) Lina E. Lundberg et al.   NUCLEIC ACIDS RESEARCH

Sex-Biased Gene Expression on the Avian Z Chromosome: Highly Expressed Genes Show Higher Male-Biased Expression

(2012) Sara Naurin et al.   PLoS One

Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome

(2012) E. Pessia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

Mediation of Drosophila autosomal dosage effects and compensation by network interactions

(2012) John H Malone et al.   GENOME BIOLOGY

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq

(2011) Jochen BW Wolf et al.   BMC GENOMICS

Small but mighty: the evolutionary dynamics of W and Y sex chromosomes

(2011) Judith E. Mank   CHROMOSOME RESEARCH

SOME INCONVENIENT TRUTHS ABOUT SEX CHROMOSOME DOSAGE COMPENSATION AND THE POTENTIAL ROLE OF SEXUAL CONFLICT

(2011) Judith E. Mank et al.   EVOLUTION

Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

(2011) Beatriz Vicoso et al.   Genome Biology and Evolution

Emergence of male-biased genes on the chicken Z-chromosome: Sex-chromosome contrasts between male and female heterogametic systems

(2011) H. Ellegren   GENOME RESEARCH

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Comparative interactomics with Funcoup 2.0

(2011) A. Alexeyenko et al.   NUCLEIC ACIDS RESEARCH

The Choice of the Filtering Method in Microarrays Affects the Inference Regarding Dosage Compensation of the Active X-Chromosome

(2011) Raphaële Castagné et al.   PLoS One

ConDeTri - A Content Dependent Read Trimmer for Illumina Data

(2011) Linnéa Smeds et al.   PLoS One

Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos

(2010) Shaobing O Zhang et al.   BMC GENOMICS

Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

(2010) Y. Itoh et al.   GENOME RESEARCH

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Ontogenetic Complexity of Sexual Dimorphism and Sex-Specific Selection

(2010) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Trisomy and triploidy are sources of embryo mortality in the zebra finch

(2010) W. Forstmeier et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

(2009) Craig A. Smith et al.   NATURE

The unique genomic properties of sex-biased genes: Insights from avian microarray data

(2008) Judith E Mank et al.   BMC GENOMICS

Synteny conservation of the Z chromosome in 14 avian species (11 families) supports a role for Z dosage in avian sex determination

(2008) I. Nanda et al.   CYTOGENETIC AND GENOME RESEARCH

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

(2008) J E Mank et al.   HEREDITY

Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori

(2008) Xingfu Zha et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS